View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5727_high_2 (Length: 401)
Name: NF5727_high_2
Description: NF5727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5727_high_2 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 24 - 401
Target Start/End: Original strand, 48093023 - 48093401
Alignment:
| Q |
24 |
gtaacgtaactatactaatcatattcatatgatatacagtaatttaataatggtagcataactattagatttatggtaatattaccttcttatnnnnnnn |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48093023 |
gtaacgtaactatactaatcatattcatatgatatacagtaatttaataatggtagcataactattagatttatggtaatattaccttcttatataaaaa |
48093122 |
T |
|
| Q |
124 |
nnnn-gtattggttatgcaggatttgttacatcacagatagcatgttgtggtcaaggaccttacaatggacttgggctatgcacaccactctctaattta |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
48093123 |
aaaaagtattggttatgcaggatttgttacatcacagatagcatgttgtggtcaaggaccctacaatggacttgggctatgcacaccactatctaattta |
48093222 |
T |
|
| Q |
223 |
tgccctaaccgtgacgaatatgcattttgggatgcatttcatccttcagaaaaggctaacagcttgattgttcaacagatcttgtcaggcacaactgatt |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48093223 |
tgccctaaccgtgacgaatatgcattttgggatgcatttcatccttcagaaaaggctaacagcttgattgttcaacagatcttgtcaggcacaactgatt |
48093322 |
T |
|
| Q |
323 |
atatgtatccaatgaatctcagcactgttttagccttggattccaaaaacacatagcaagctttgattgattttaatat |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48093323 |
atatgtatccaatgaatctcagcactgttttagccttggattccaaaaacacatagcaagctttgattgattttaatat |
48093401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 29 - 217
Target Start/End: Complemental strand, 13324787 - 13324591
Alignment:
| Q |
29 |
gtaactatactaatcatattcatatgatatacagtaatttaata---------atggtagcataactattagatttatggtaatattaccttcttatnnn |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13324787 |
gtaactatactaatcatattcatatgatatagagtaatttaatatacaatataatggtagcataactattaaatttatggtaatattaccttcttataaa |
13324688 |
T |
|
| Q |
120 |
nnnnnnnngtattggttat----gcaggatttgttacatcacagatagcatgttgtggtcaaggaccttacaatggacttgggctatgcacaccactctc |
215 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
13324687 |
aaaaa---gtattggttatatatgcaggatttgttacatcacagatagcatgttgtggtcaaggaccctacaatggacttgggc--tgcacaccactctc |
13324593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 140 - 283
Target Start/End: Original strand, 48085138 - 48085281
Alignment:
| Q |
140 |
caggatttgttacatcacagatagcatgttgtggtcaaggaccttacaatggacttgggctatgcacaccactctctaatttatgccctaaccgtgacga |
239 |
Q |
| |
|
||||||||| |||||| || ||||||| ||||| ||||| || ||||||||||||||||| || |||||| ||| || || ||||| ||| | || |
|
|
| T |
48085138 |
caggatttgcaacatcaaaggtagcatgctgtggacaagggccatacaatggacttgggctttgtacaccagcctcaaacttgtgcccaaacagagaact |
48085237 |
T |
|
| Q |
240 |
atatgcattttgggatgcatttcatccttcagaaaaggctaaca |
283 |
Q |
| |
|
|||| |||||||||||||| ||||| || |||||||| |||| |
|
|
| T |
48085238 |
taatgctttttgggatgcattccatccatctgaaaaggcaaaca |
48085281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 29 - 217
Target Start/End: Complemental strand, 5666660 - 5666464
Alignment:
| Q |
29 |
gtaactatactaatcatattcatatgatatacagtaatttaata---------atggtagcataactattagatttatggtaatattaccttcttatnnn |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5666660 |
gtaactatactaatcatattcatatgatatagagtaatttaatatacaatataatggtagcataactattaaatttatggtaatattaccttcttataaa |
5666561 |
T |
|
| Q |
120 |
nnnnnnnngtattggttat----gcaggatttgttacatcacagatagcatgttgtggtcaaggaccttacaatggacttgggctatgcacaccactctc |
215 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
5666560 |
aaaaa---gtattggttatatatgcaggatttgttacatcacagatagcatgttgtggtcaaggaccctacaatggacttgggc--tgcacaccactctc |
5666466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 140 - 351
Target Start/End: Complemental strand, 35376420 - 35376209
Alignment:
| Q |
140 |
caggatttgttacatcacagatagcatgttgtggtcaaggaccttacaatggacttgggctatgcacaccactctctaatttatgccctaaccgtgacga |
239 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| ||||| ||||||||||| |||| ||||||||||| || || || || |||| || || ||| |
|
|
| T |
35376420 |
caggatttgttacatcaaagatagcttgttgtggacaaggcccttacaatgggattggactatgcacacccctttcaaacttgtgccaaaatcgagacct |
35376321 |
T |
|
| Q |
240 |
atatgcattttgggatgcatttcatccttcagaaaaggctaacagcttgattgttcaacagatcttgtcaggcacaactgattatatgtatccaatgaat |
339 |
Q |
| |
|
||||||||||||||| |||| ||||| || ||||| |||| ||| | || || |||||||||||| | ||| | | ||| |||||||| || |||||| |
|
|
| T |
35376320 |
ttatgcattttgggatccattccatccatctgaaaaagctagcagaatcatagtgcaacagatcttgactggctccaatgagtatatgtaccctatgaat |
35376221 |
T |
|
| Q |
340 |
ctcagcactgtt |
351 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
35376220 |
ctaagcactgtt |
35376209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University