View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5727_high_4 (Length: 341)
Name: NF5727_high_4
Description: NF5727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5727_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 66 - 272
Target Start/End: Original strand, 40815134 - 40815340
Alignment:
| Q |
66 |
gttgaaatctgaatcatctgatcttgataacatggccttgaaccctcagactacatagaaacctactgtacataggtacaatggataccgcgaagattta |
165 |
Q |
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| T |
40815134 |
gttgaaatctgaatcatctgatcttaataacatgaccttgaaccctcggactacatagaaacctattgtacataggtacaatggataccgccaagattta |
40815233 |
T |
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| Q |
166 |
ctttgttattatacctatatatattttctatgggagcctttataaaattctagtttaactaaggttttgggttcaaattcaactttgggcatgccgcaac |
265 |
Q |
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| T |
40815234 |
ctttgttattatacctatatatattttctatgggagcctttataaaattctagtttaactaaggttttgggttcaaatttaactttgggcatcccgcaac |
40815333 |
T |
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| Q |
266 |
gttaaaa |
272 |
Q |
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||||||| |
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| T |
40815334 |
gttaaaa |
40815340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 268 - 332
Target Start/End: Original strand, 40815891 - 40815955
Alignment:
| Q |
268 |
taaaatttttaggaagattctatcgtctgtttgggtctcaaaaagcataaggaattagtctctgc |
332 |
Q |
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| T |
40815891 |
taaaacttttaggaagagtttgtcgtcattttgggtctcaaaaagcataaggaattaatctctgc |
40815955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 274
Target Start/End: Original strand, 33096782 - 33096843
Alignment:
| Q |
213 |
ttctagtttaactaaggttttgggttcaaattcaactttgggcatgccgcaacgttaaaatt |
274 |
Q |
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| T |
33096782 |
ttctaatttaactaaggttctgagttcgaattcaactttgggtgtgcagcaacgttaaaatt |
33096843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 2804609 - 2804542
Alignment:
| Q |
213 |
ttctagtttaactaaggttttgggttcaaattcaactttgggcatgccgcaacgttaaaatttttagg |
280 |
Q |
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| T |
2804609 |
ttctagcttaaccaaggttttgggttcgaatccaaccttgagcatgcagcagcgttaaaacttttagg |
2804542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 274
Target Start/End: Complemental strand, 34210112 - 34210071
Alignment:
| Q |
233 |
tgggttcaaattcaactttgggcatgccgcaacgttaaaatt |
274 |
Q |
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| T |
34210112 |
tgggttcaaattcaactttgtgcatgcagcagcgttaaaatt |
34210071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 272
Target Start/End: Original strand, 32534097 - 32534156
Alignment:
| Q |
213 |
ttctagtttaactaaggttttgggttcaaattcaactttgggcatgccgcaacgttaaaa |
272 |
Q |
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| T |
32534097 |
ttctagcttaaccaaggttttggattcaaattcagctttgagcatgcaacaacgttaaaa |
32534156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 280
Target Start/End: Original strand, 10841038 - 10841098
Alignment:
| Q |
220 |
ttaactaaggttttgggttcaaattcaactttgggcatgccgcaacgttaaaatttttagg |
280 |
Q |
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||||| ||| ||||||||||||||||| | ||||||||| ||||||||||||| ||||| |
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| T |
10841038 |
ttaaccaagattttgggttcaaattcagccttgggcatgtaacaacgttaaaattcttagg |
10841098 |
T |
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