View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5727_high_9 (Length: 251)
Name: NF5727_high_9
Description: NF5727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5727_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 45611805 - 45611967
Alignment:
| Q |
1 |
atcaaatgtggcttccattaccgaagatatcacaacaagtttcgcaaaagccaatttttctcatgtttatgttagt----gtctgcatatgnnnnnnn-- |
94 |
Q |
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| T |
45611805 |
atcaaatgtggcttctattaccgaagatatcacaacaagtttcagaaaagtcaattttcctcatgtttatgttagttagtgtctacatatgaaaaaaaaa |
45611904 |
T |
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| Q |
95 |
ccaaagacattgtggtcttgacacctcaatagatcactaataatttgatgaaatataagggat |
157 |
Q |
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| T |
45611905 |
ccaaagacattgtggtcttgacacctcaatagatcactaataatttgaggaaatataagggat |
45611967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 45609474 - 45609553
Alignment:
| Q |
1 |
atcaaatgtggcttccattaccgaagatatcacaacaagtttcgcaaaagccaatttttctcatgtttatgttagtgtct |
80 |
Q |
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| T |
45609474 |
atcaaatgtggcttctattaccgaagatatcacaataagtttcggaaaagccaattttcctcgtgtttatattagtgtct |
45609553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 36895369 - 36895409
Alignment:
| Q |
132 |
taataatttgatgaaatataagggattgaatgtaattacat |
172 |
Q |
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| T |
36895369 |
taataatttgataaaatataagtgattgaatgtaatcacat |
36895409 |
T |
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