View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5727_low_10 (Length: 236)
Name: NF5727_low_10
Description: NF5727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5727_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 45609233 - 45609009
Alignment:
| Q |
1 |
cttctggttctgaattagagacacggtcatagcgttacaccccctaaaatgttataaacagaaaaatacaaataaagatttatgtgtctaatgaaat--- |
97 |
Q |
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| T |
45609233 |
cttctggttctgaattagagaaatggtcatggcgttacaccccctaaaatgttataaacagaaaaatacagataaagatttatgtgtctagagtaataag |
45609134 |
T |
|
| Q |
98 |
aaaattgagttgtattaaatagtgtagatagaagaaacggtttggtgaaagataaagacaataaagtgttacattagaatggattcatggaagagaagaa |
197 |
Q |
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| T |
45609133 |
aaaattgagttgtattaaatagtgtagatagaagaaacggtttggtgaaagataaagacaataaaatgttacattagaatggattcatggaagagaagaa |
45609034 |
T |
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| Q |
198 |
aggggctctgaactgtagaagttat |
222 |
Q |
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||||| ||||||||||||||||||| |
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| T |
45609033 |
agggggtctgaactgtagaagttat |
45609009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 45611564 - 45611435
Alignment:
| Q |
1 |
cttctggttctgaattagagacacggtcatagcgttacaccccctaaaatgttataaacagaaaaatacaaataaagatttatgtgtctaatgaaataaa |
100 |
Q |
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||||||||| ||||||||||||| |||| | || |||||||||||||||||| || ||| || ||| |||||||| ||||||| | |||| |
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| T |
45611564 |
cttctggttttgaattagagacatattcatggtgtgacaccccctaaaatgttagaagcaggaa--------taatgatttatgagtctaatta--taaa |
45611475 |
T |
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| Q |
101 |
attgagttgtattaaatagt-gtagatagaagaaacggtt |
139 |
Q |
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||||||| |||||||||||| ||||||||||||||||||| |
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| T |
45611474 |
attgagtggtattaaatagtggtagatagaagaaacggtt |
45611435 |
T |
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