View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5727_low_12 (Length: 231)

Name: NF5727_low_12
Description: NF5727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5727_low_12
NF5727_low_12
[»] chr5 (6 HSPs)
chr5 (17-224)||(19422524-19422731)
chr5 (17-224)||(20087409-20087616)
chr5 (17-224)||(30824166-30824373)
chr5 (128-224)||(19681465-19681561)
chr5 (135-224)||(30664487-30664576)
chr5 (52-130)||(19681580-19681658)
[»] chr2 (4 HSPs)
chr2 (17-224)||(11747601-11747808)
chr2 (17-224)||(37017403-37017610)
chr2 (50-224)||(44335167-44335362)
chr2 (135-213)||(6003783-6003861)
[»] chr8 (3 HSPs)
chr8 (17-224)||(42610393-42610600)
chr8 (128-213)||(8591749-8591834)
chr8 (50-130)||(8591853-8591933)
[»] chr4 (5 HSPs)
chr4 (52-224)||(10228644-10228837)
chr4 (128-224)||(20171978-20172074)
chr4 (128-213)||(5057050-5057135)
chr4 (62-130)||(5056963-5057031)
chr4 (52-123)||(20171881-20171952)
[»] chr6 (3 HSPs)
chr6 (128-224)||(13049723-13049819)
chr6 (50-224)||(22025059-22025254)
chr6 (52-130)||(13049838-13049916)
[»] chr3 (1 HSPs)
chr3 (50-224)||(26523968-26524163)
[»] chr7 (1 HSPs)
chr7 (52-224)||(46486867-46487060)
[»] chr1 (1 HSPs)
chr1 (196-224)||(6409436-6409464)


Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 19422731 - 19422524
Alignment:
Q  17 tcatcgtcatcatcccaaccgcactacaacccgtcatcgcaactgtttcaatcacagtggtcacaaaatgtgtatgaaccaccacaactaataactcaac 116  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19422731 tcatcgtcatcgtcccaaccgcactacaacccgtcatcgcaaccgtttcaatcacagtggtcacaaaatgtgtacgaaccaccacaactaataactcaac 19422632  T
Q  117 ctcatccctctcaacccgaaactttgaacgatgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19422631 ctcatccctctcaacccgaaactttgaacgatgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaa 19422532  T
Q  217 tgatgatg 224  Q
    ||||||||    
T  19422531 tgatgatg 19422524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 20087616 - 20087409
Alignment:
Q  17 tcatcgtcatcatcccaaccgcactacaacccgtcatcgcaactgtttcaatcacagtggtcacaaaatgtgtatgaaccaccacaactaataactcaac 116  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20087616 tcatcgtcatcgtcccaaccgcactacaacccgtcatcgcaaccgtttcaatcacagtggtcacaaaatgtgtacgaaccaccacaactaataactcaac 20087517  T
Q  117 ctcatccctctcaacccgaaactttgaacgatgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20087516 ctcatccctctcaacccgaaactttgaacgatgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaa 20087417  T
Q  217 tgatgatg 224  Q
    ||||||||    
T  20087416 tgatgatg 20087409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 30824166 - 30824373
Alignment:
Q  17 tcatcgtcatcatcccaaccgcactacaacccgtcatcgcaactgtttcaatcacagtggtcacaaaatgtgtatgaaccaccacaactaataactcaac 116  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30824166 tcatcgtcatcgtcccaaccgcactacaacccgtcatcgcaaccgtttcaatcacagtggtcacaaaatgtgtacgaaccaccacaactaataactcaac 30824265  T
Q  117 ctcatccctctcaacccgaaactttgaacgatgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30824266 ctcatccctctcaacccgaaactttgaacgatgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaa 30824365  T
Q  217 tgatgatg 224  Q
    ||||||||    
T  30824366 tgatgatg 30824373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 128 - 224
Target Start/End: Complemental strand, 19681561 - 19681465
Alignment:
Q  128 caacccgaaactttgaacgatgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaatgatgatg 224  Q
    |||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||  |||||||||    
T  19681561 caacccgaaactttaaacgctgaaatcgatatattcacctcccaattccaagaccaacgaaatgatgaagttcaagatgatgaagatgatgatgatg 19681465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 30664576 - 30664487
Alignment:
Q  135 aaactttgaacgatgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaatgatgatg 224  Q
    ||||||| ||||||||||| |||||||||||||||||| |||| |||||  ||| ||||||||||||||||||||| ||| |||||||||    
T  30664576 aaactttaaacgatgaaataaatatattcacctcccaaatccaggaccactcaaatgatgaagttcaagatgatgatgacgatgatgatg 30664487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 19681658 - 19681580
Alignment:
Q  52 atcgcaactgtttcaatcacagtggtcacaaaatgtgtatgaaccaccacaactaataactcaacctcatccctctcaa 130  Q
    ||||||||  ||||| ||||||||| ||||||||||||| |||||| |||||  |||||||||||||||||||||||||    
T  19681658 atcgcaaccttttcagtcacagtgggcacaaaatgtgtacgaaccatcacaaagaataactcaacctcatccctctcaa 19681580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 11747808 - 11747601
Alignment:
Q  17 tcatcgtcatcatcccaaccgcactacaacccgtcatcgcaactgtttcaatcacagtggtcacaaaatgtgtatgaaccaccacaactaataactcaac 116  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11747808 tcatcgtcatcgtcccaaccgcactacaacccgtcatcgcaaccgtttcaatcacagtggtcacaaaatgtgtacgaaccaccacaactaataactcaac 11747709  T
Q  117 ctcatccctctcaacccgaaactttgaacgatgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11747708 ctcatccctctcaacccgaaactttgaacgatgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaa 11747609  T
Q  217 tgatgatg 224  Q
    ||||||||    
T  11747608 tgatgatg 11747601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 37017403 - 37017610
Alignment:
Q  17 tcatcgtcatcatcccaaccgcactacaacccgtcatcgcaactgtttcaatcacagtggtcacaaaatgtgtatgaaccaccacaactaataactcaac 116  Q
    ||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37017403 tcatcgtcattgtcccaaccgcactacaacccgtcatcgcaaccgtttcaatcacagtggtcacaaaatgtgtacgaaccaccacaactaataactcaac 37017502  T
Q  117 ctcatccctctcaacccgaaactttgaacgatgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37017503 ctcatccctctcaacccgaaactttgaacgatgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaa 37017602  T
Q  217 tgatgatg 224  Q
    ||||||||    
T  37017603 tgatgatg 37017610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 50 - 224
Target Start/End: Complemental strand, 44335362 - 44335167
Alignment:
Q  50 tcatcgcaactgtttcaatcacagtggtcacaaaatgtgtatgaaccaccacaactaataactcaacctcatccctctcaa------------------- 130  Q
    ||||||||||  ||||| ||||||||||||||||||||||| |||||| |||||  |||||||||||||||||||||||||                       
T  44335362 tcatcgcaaccttttcagtcacagtggtcacaaaatgtgtacgaaccatcacaaagaataactcaacctcatccctctcaaacaccatcccgttcaacac 44335263  T
Q  131 --cccgaaactttgaacgatgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaatgatgatg 224  Q
      ||||||||||| |||| ||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||  |||||||||    
T  44335262 aacccgaaactttaaacgctgaaatcgatatattcacctcccaattccaagaccaacgaaatgatgaagttcaagatgatgaagatgatgatgatg 44335167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 213
Target Start/End: Original strand, 6003783 - 6003861
Alignment:
Q  135 aaactttgaacgatgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaaga 213  Q
    ||||||| ||||||||||| |||||||||||||||||| |||| |||||| ||| ||||||||   | |||||||||||    
T  6003783 aaactttaaacgatgaaataaatatattcacctcccaaatccaggaccaatcaaatgatgaagacgatgatgatgaaga 6003861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 42610600 - 42610393
Alignment:
Q  17 tcatcgtcatcatcccaaccgcactacaacccgtcatcgcaactgtttcaatcacagtggtcacaaaatgtgtatgaaccaccacaactaataactcaac 116  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  42610600 tcatcgtcatcgtcccaaccgcactacaacccgtcatcgcaaccgtttcaatcacagtggtcacaaaatgtgtacgaaccaccgcaactaataactcaac 42610501  T
Q  117 ctcatccctctcaacccgaaactttgaacgatgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42610500 ctcatccctctcaacccgaaactttgaacgatgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaa 42610401  T
Q  217 tgatgatg 224  Q
    ||| ||||    
T  42610400 tgacgatg 42610393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 128 - 213
Target Start/End: Complemental strand, 8591834 - 8591749
Alignment:
Q  128 caacccgaaactttgaacgatgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaaga 213  Q
    |||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||||  || ||||||||||||||||||||||||    
T  8591834 caactcgaaactttaaacgctgaaatcgatatattcacctcccaattccaagaccaagaaaatgatgaagttcaagatgatgaaga 8591749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 8591933 - 8591853
Alignment:
Q  50 tcatcgcaactgtttcaatcacagtggtcacaaaatgtgtatgaaccaccacaactaataactcaacctcatccctctcaa 130  Q
    ||||||||||  ||||| |||||||||||||||||||||||||||||  |||||  ||||||||||||| || ||||||||    
T  8591933 tcatcgcaaccttttcagtcacagtggtcacaaaatgtgtatgaaccttcacaaagaataactcaaccttattcctctcaa 8591853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 52 - 224
Target Start/End: Original strand, 10228644 - 10228837
Alignment:
Q  52 atcgcaactgtttcaatcacagtggtcacaaaatgtgtatgaaccaccacaactaataactcaacctcatccctctcaa--------------------- 130  Q
    ||||||||  ||||| ||| ||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||                         
T  10228644 atcgcaaccttttcagtcaaagtggtcacaaaatgtgtacgaaccatcacaaataataactcaacctcatccctctcaaacaccatctcgttcaacacaa 10228743  T
Q  131 cccgaaactttgaacgatgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaatgatgatg 224  Q
    ||| |||| || |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  10228744 cccaaaaccttaaacgatgaaatcaatatattcacctcccaatttcaagaccaaccaaatgatgaagttcaagatgatgaagacgatgatgatg 10228837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 128 - 224
Target Start/End: Original strand, 20171978 - 20172074
Alignment:
Q  128 caacccgaaactttgaacgatgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaatgatgatg 224  Q
    |||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||  |||||||||    
T  20171978 caacccgaaactttaaacgctgaaatcgatatattcacctcccaattccaagaccaacgaaatgatgaagttcaagatgatgaagatgatgatgatg 20172074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 128 - 213
Target Start/End: Original strand, 5057050 - 5057135
Alignment:
Q  128 caacccgaaactttgaacgatgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaaga 213  Q
    |||||||||| ||| |||||||||||| ||||||| |||||||||||||| ||||||| || ||||||||||||||||||||||||    
T  5057050 caacccgaaattttaaacgatgaaatcgatatatttacctcccaattccatgaccaacgaaatgatgaagttcaagatgatgaaga 5057135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 5056963 - 5057031
Alignment:
Q  62 tttcaatcacagtggtcacaaaatgtgtatgaaccaccacaactaataactcaacctcatccctctcaa 130  Q
    ||||| ||||||||||||||||||||||| |||||| |||||  |||||||||||||||||||||||||    
T  5056963 tttcagtcacagtggtcacaaaatgtgtacgaaccatcacaaagaataactcaacctcatccctctcaa 5057031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 20171881 - 20171952
Alignment:
Q  52 atcgcaactgtttcaatcacagtggtcacaaaatgtgtatgaaccaccacaactaataactcaacctcatcc 123  Q
    ||||||||  ||||| ||||||||||||||||||||||| |||||| |||||  ||||||||||||||||||    
T  20171881 atcgcaaccttttcagtcacagtggtcacaaaatgtgtacgaaccatcacaaagaataactcaacctcatcc 20171952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 128 - 224
Target Start/End: Complemental strand, 13049819 - 13049723
Alignment:
Q  128 caacccgaaactttgaacgatgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaatgatgatg 224  Q
    |||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||    
T  13049819 caaccccaaactttaaacgatgaaatcactatattcacctcccaattccaagaccaaccaaatgatgaagttgaagatgatgaagacgatgatgatg 13049723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 50 - 224
Target Start/End: Complemental strand, 22025254 - 22025059
Alignment:
Q  50 tcatcgcaactgtttcaatcacagtggtcacaaaatgtgtatgaaccaccacaactaataactcaacctcatccctctcaa------------------- 130  Q
    ||||||||||  ||||| ||||||||||||||||||||||| |||||| |||||  |||||||||||||||||||||||||                       
T  22025254 tcatcgcaaccttttcagtcacagtggtcacaaaatgtgtacgaaccatcacaaagaataactcaacctcatccctctcaaacaccatcccgttcaacac 22025155  T
Q  131 --cccgaaactttgaacgatgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaatgatgatg 224  Q
      ||||||||||| |||| ||||||| ||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||  |||||||||    
T  22025154 aacccgaaactttaaacgctgaaatcgatatattcacctcccaattacaagaccaacgaaatgatgaagttcaagatgatgaagatgatgatgatg 22025059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 13049916 - 13049838
Alignment:
Q  52 atcgcaactgtttcaatcacagtggtcacaaaatgtgtatgaaccaccacaactaataactcaacctcatccctctcaa 130  Q
    ||||||||  ||||| ||||| ||||||||||||||||| |||||| |||||  || ||||||||||||||||||||||    
T  13049916 atcgcaaccttttcagtcacaatggtcacaaaatgtgtacgaaccatcacaaagaacaactcaacctcatccctctcaa 13049838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 50 - 224
Target Start/End: Complemental strand, 26524163 - 26523968
Alignment:
Q  50 tcatcgcaactgtttcaatcacagtggtcacaaaatgtgtatgaaccaccacaactaataactcaacctcatccctctcaa------------------- 130  Q
    ||||||||||  ||||| ||||||||||||||||||||||| |||||| |||||  |||||||||||||||||||||||||                       
T  26524163 tcatcgcaaccttttcagtcacagtggtcacaaaatgtgtacgaaccatcacaaagaataactcaacctcatccctctcaaacaccatcccgttcaacac 26524064  T
Q  131 --cccgaaactttgaacgatgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaatgatgatg 224  Q
      ||||||||||| |||| ||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||  |||||||||    
T  26524063 aacccgaaactttaaacgctgaaatcgatatattcacctcccaattccaagaccaacgaaatgatgaagttcaagatgatgaagatgatgatgatg 26523968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 52 - 224
Target Start/End: Complemental strand, 46487060 - 46486867
Alignment:
Q  52 atcgcaactgtttcaatcacagtggtcacaaaatgtgtatgaaccaccacaactaataactcaacctcatccctctcaa--------------------- 130  Q
    ||||||||  ||||| ||||||||||||||||||||||| |||||| |||||  |||||||||||||||||||||||||                         
T  46487060 atcgcaaccttttcagtcacagtggtcacaaaatgtgtacgaaccatcacaaagaataactcaacctcatccctctcaaacaccatcccgttcaacacaa 46486961  T
Q  131 cccgaaactttgaacgatgaaatcaatatattcacctcccaattccaagaccaaccaactgatgaagttcaagatgatgaagacaatgatgatg 224  Q
    ||||||||||| |||| ||||||| ||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||  |||||||||    
T  46486960 cccgaaactttaaacgctgaaatcgatatattcacctcccaatttcaagaccaacgaaatgatgaagttcaagatgatgaagatgatgatgatg 46486867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 6409436 - 6409464
Alignment:
Q  196 agttcaagatgatgaagacaatgatgatg 224  Q
    |||||||||||||||||||||||||||||    
T  6409436 agttcaagatgatgaagacaatgatgatg 6409464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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