View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5727_low_3 (Length: 396)
Name: NF5727_low_3
Description: NF5727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5727_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 13 - 377
Target Start/End: Complemental strand, 30413577 - 30413213
Alignment:
| Q |
13 |
aatatgcaactctaacccacactttttgtcaaaaaagagcaacacttatcactttcatatttatatgaaccaatcttttatttcaatgctaccaaataat |
112 |
Q |
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| T |
30413577 |
aatatgcaactctaacccacactttttgtcaaaaaagagcaacacttatcactttcatatttatatgaaccaatcttttatttcaatgctaccaaataat |
30413478 |
T |
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| Q |
113 |
aatttagctactttnnnnnnnnttgatgcaacctactttgccacctcaagttcttccaattttgagtagaaaaaataacgaacaaatcctttctcccatt |
212 |
Q |
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|||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30413477 |
aattaagctactttaaaaaaaattgatgcaacctactttgccaccttaagttcttccaattttgagtagaaaaaataacgaacaaatcctttctcccatt |
30413378 |
T |
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| Q |
213 |
aaaccttcttagatacttccattgaagttgctattatgacatttcatttatttcttcacttaaagatacatttggctctttttcaatgttgttctaaacc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30413377 |
aaaccttcttagatacttccattgaagttgctattatgacatttcatttatttcttcacttaaagatacatttggctctttttcaatgttgttctaaacc |
30413278 |
T |
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| Q |
313 |
actaatgcttgatatatgaccctttatactttgatggttgtttgatgttgagattaagagctctc |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30413277 |
actaatgcttgatatatgaccctttatactttgatggttgtttgatgttgagattaagagctctc |
30413213 |
T |
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