View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5727_low_8 (Length: 253)
Name: NF5727_low_8
Description: NF5727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5727_low_8 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 48093637 - 48093400
Alignment:
| Q |
16 |
aaaaaagagtggtaaggaaaaataaacaattggacacaacaaaaatgactcaattattatatatgcaattacttttgcactgcaagagagattgataata |
115 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48093637 |
aaaaaagagtggtaaggaaaaataaactattggacacaacaaaaatgactcaattattatatatgcaattacttttgcactgcaagagagattgataata |
48093538 |
T |
|
| Q |
116 |
aagatagtgctcatccctcatccatcaagtactatttagggagctgtaacttttaaagttccaatccaacttatacatataaatcacaaattaacaagca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48093537 |
aagatagtgctcatccctcatccatcaagtactatttagggagctgtaacttttaaagttccaatccaacttatacatataaatcacaaattaacaagca |
48093438 |
T |
|
| Q |
216 |
gatcaactttttaaaagatagaaaaaacttgcaggaat |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48093437 |
gatcaactttttaaaagatagaaaaaacttgcaggaat |
48093400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 13324444 - 13324522
Alignment:
| Q |
16 |
aaaaaagagtggtaaggaaaaataaacaattggacacaacaaaaatgactcaattattatatatgcaattacttttgca |
94 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13324444 |
aaaaaagagtggtaaggaaaaaaaaactattggaaacaacaaaaatgactcaattattatatatgcaattacttttgca |
13324522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 5666317 - 5666395
Alignment:
| Q |
16 |
aaaaaagagtggtaaggaaaaataaacaattggacacaacaaaaatgactcaattattatatatgcaattacttttgca |
94 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5666317 |
aaaaaagagtggtaaggaaaaagaaactattggaaacaacaaaaatgactcaattattatatatgcaattacttttgca |
5666395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University