View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5728-Insertion-2 (Length: 1018)
Name: NF5728-Insertion-2
Description: NF5728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5728-Insertion-2 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 949; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 949; E-Value: 0
Query Start/End: Original strand, 8 - 971
Target Start/End: Complemental strand, 2018102 - 2017138
Alignment:
| Q |
8 |
acaaattgcagagttaatcaagtgtctcatggaaggggaagaaggcgggaaactgcgcaaaaatatgaaggaattaaaagaatctgctaatagtgcacat |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2018102 |
acaaattgcagagttaatcaagtgtctcatggaaggggaagaaggtgggaaactgcgcaaaaatatgaaggaattaaaagaatctgctaatagtgcacat |
2018003 |
T |
|
| Q |
108 |
aaagatgatggatcttttacaaagacactttctcaattagcactcaagtggagaaatttggtatagaaaaacaagttgtatgacaatatgtattatgaga |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2018002 |
aaagatgatggatcttttacaaagacactttctcaattagcactcaagtggagaaatttggtatagaaaaacaagttgtatgacaatatgtattatgaga |
2017903 |
T |
|
| Q |
208 |
tcaagatcaaggagaaaaaggagagaaaactgaaatgttgattcattgatctgtaagtagatttagttacatgaatcctatttattgaacaaacaagata |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2017902 |
tcaagatcaaggagaaaaaggagagaaaactgaaatgttgattcattgatctgtaagtagatttagttacatgaatcctatttattgaacaaacaagata |
2017803 |
T |
|
| Q |
308 |
ataggtttatttgagtagtaaggaaccggttataactaacttctattaaggctatttgtgctatctataggtgatgagctggattgttgacttgctatat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2017802 |
ataggtttatttgagtagtaaggaaccggttataactaacttctattaaggctatttgtgctatctataggtgatgagctggattgttgacttgctatat |
2017703 |
T |
|
| Q |
408 |
caggcgaaagcttgttttgtgtagaaataccttatttgtcatgattcaaaaaatatatatcaccttatttggccttatattttacagtttacttttcttt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2017702 |
caggcgaaagcttgttttgtgtagaaataccttatttgtcatgattcaaaaaatatatatcaccttatttggccttatattttacagtttacttttcttt |
2017603 |
T |
|
| Q |
508 |
gtcttatcttcaataaatattgtgcatccattaatggatattgcatgattctcagtactttctattggtgactatatatatcttttgttttgtaatgtca |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
2017602 |
gtcttatcttcaataaatattgtgcatccattaatggatattgcatgattctcagtactttctattggtgactatatatatcttttgttttgtaatggca |
2017503 |
T |
|
| Q |
608 |
tgatttatcatatctgaatttctatatacagcattcaccttgtatagtgattttgactctggccttttagatatttagactatgatcatcacaagcttat |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2017502 |
tgatttatcatatctgaatttctatatacagcattcaccttgtatagtgattttgactctggccttttagatatttagactatgatcatcacaagcttat |
2017403 |
T |
|
| Q |
708 |
gctgatattgttttgcattgtcgagttgcacatgccctttagactaatctgaattattttctttgttaaggacaaatgctcttttagatacaaatggtgt |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2017402 |
gctgatattgttttgcattgtcgagttgcacatgccctttagactaatctgaattattttctttgttaaggacaaatgctcttttagatacaaatggtgt |
2017303 |
T |
|
| Q |
808 |
atagttcagttaggaatctaccttgacacaaatttgagaccaaagaaactagatatagaccagggaaaagtttgtgccttgaaggttttatcataatcca |
907 |
Q |
| |
|
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|
| T |
2017302 |
atagttcagttaggaatctaccttgacacaaatttgagaccaaagaaactagatatagaccagggaaaagtttgtgccttgaaggttttatcataatcca |
2017203 |
T |
|
| Q |
908 |
gatgactaaccatcttaatgagaatacttgagttcttcatctttcaagcaagg-tgttaaaatcc |
971 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
2017202 |
gatgactaaccatcttaatgagaatacttgagttcttcatctttcaagcaaggttgttaaaatcc |
2017138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 8e-70
Query Start/End: Original strand, 8 - 197
Target Start/End: Complemental strand, 2014719 - 2014529
Alignment:
| Q |
8 |
acaaattgcagagttaatcaagtgtctcatggaaggggaagaaggcgggaaactgcgcaaaaatatgaaggaattaaaagaatctgctaatagtgcacat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2014719 |
acaaattgcagagttaatcaagtgtctcatggaaggggaagaaggtgggaaactgcgcaaaaatatgaaggaattaaaagaatctgctaatagtgcacat |
2014620 |
T |
|
| Q |
108 |
aaagatgatggatcttttacaaagacactttctcaattagcactcaagtggagaaa-tttggtatagaaaaacaagttgtatgacaatatg |
197 |
Q |
| |
|
|||||||| || ||| ||||||||| ||||||||||||| || ||||||||||| |||||||| |||||||||||| ||||||||||| |
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|
| T |
2014619 |
aaagatgacgggtctgctacaaagactctttctcaattagttcttaagtggagaaactttggtattgaaaaacaagtttaatgacaatatg |
2014529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 1963712 - 1963906
Alignment:
| Q |
10 |
aaattgcagagttaatcaagtgtctcatggaaggggaagaaggcgggaaactgcgcaaaaatatgaaggaattaaaagaatctgctaatagtgcacataa |
109 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| |||||| |||||| ||||| |||||| |
|
|
| T |
1963712 |
aaattgctgagttgatcaagtgtctcatggaaggggaagaaggtgggaaactgcgtaataatatgaaggaatttaaagaagctgctagtagtgtacataa |
1963811 |
T |
|
| Q |
110 |
agatgatggatcttttacaaagacactttctcaattagcactcaagtggag-aaatttggtatagaaaaacaagttgtatgacaatatgtattat |
203 |
Q |
| |
|
||| ||||| ||| ||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
1963812 |
agaagatggttctactacaaagactctttctcaattagcactcaagtggagtaactttggtatagaaaaacaagttttatgacaatatgtattat |
1963906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 24 - 179
Target Start/End: Complemental strand, 2004303 - 2004148
Alignment:
| Q |
24 |
atcaagtgtctcatggaaggggaagaaggcgggaaactgcgcaaaaatatgaaggaattaaaagaatctgctaatagtgcacataaagatgatggatctt |
123 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||| ||||||| || |||||||||||||||||||||||| | ||| ||||| ||||| |||| |
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|
| T |
2004303 |
atcaagtgtctcatggaaggggaagaaggtgagaaattgcgcaataacatgaaggaattaaaagaatctgcttcgaatgctgtcaaagaagatggttctt |
2004204 |
T |
|
| Q |
124 |
ttacaaagacactttctcaattagcactcaagtggagaaatttggtatagaaaaac |
179 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||| || ||| ||||| |
|
|
| T |
2004203 |
ctacaaacactatttctcaattagcactcaagtggagaaatttagtgtaggaaaac |
2004148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 24 - 179
Target Start/End: Complemental strand, 2011298 - 2011143
Alignment:
| Q |
24 |
atcaagtgtctcatggaaggggaagaaggcgggaaactgcgcaaaaatatgaaggaattaaaagaatctgctaatagtgcacataaagatgatggatctt |
123 |
Q |
| |
|
|||||| ||||||||||||| ||||| | | |||| ||| ||| ||||||||||||||||||||| |||| || ||||| ||||| |||||||||| |
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|
| T |
2011298 |
atcaagcgtctcatggaaggagaagagtgtgagaaattgcacaataatatgaaggaattaaaagaagttgcttctaatgcactcaaagaagatggatctt |
2011199 |
T |
|
| Q |
124 |
ttacaaagacactttctcaattagcactcaagtggagaaatttggtatagaaaaac |
179 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
2011198 |
ctacaaagactatttctcaattaacactcaagtggagaaatttggtgcagaaaaac |
2011143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 24 - 179
Target Start/End: Original strand, 1969338 - 1969493
Alignment:
| Q |
24 |
atcaagtgtctcatggaaggggaagaaggcgggaaactgcgcaaaaatatgaaggaattaaaagaatctgctaatagtgcacataaagatgatggatctt |
123 |
Q |
| |
|
|||||| ||||||||||||| |||||||| | ||| ||||||| || |||||||||||||||||| ||||| | |||| ||||| ||||| |||| |
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|
| T |
1969338 |
atcaagcgtctcatggaaggagaagaaggtgagaagttgcgcaataacatgaaggaattaaaagaagctgcttcaaatgcaatcaaagaagatggttctt |
1969437 |
T |
|
| Q |
124 |
ttacaaagacactttctcaattagcactcaagtggagaaatttggtatagaaaaac |
179 |
Q |
| |
|
|||||| || |||||||| ||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
1969438 |
ctacaaaaactatttctcaaatagcactcaagtggagaaatttggtgtaggaaaac |
1969493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 24 - 169
Target Start/End: Original strand, 1965396 - 1965541
Alignment:
| Q |
24 |
atcaagtgtctcatggaaggggaagaaggcgggaaactgcgcaaaaatatgaaggaattaaaagaatctgctaatagtgcacataaagatgatggatctt |
123 |
Q |
| |
|
|||||||||||||||||||| ||||| | | |||| ||| ||| ||||||||||| ||||||| | |||| | ||||| ||||| |||||||||| |
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|
| T |
1965396 |
atcaagtgtctcatggaaggagaagagtgtgagaaattgcacaataatatgaaggagttaaaaggagttgcttccaatgcactcaaagaagatggatctt |
1965495 |
T |
|
| Q |
124 |
ttacaaagacactttctcaattagcactcaagtggagaaatttggt |
169 |
Q |
| |
|
||||||||| | ||||||||| |||||||||||||||||||||| |
|
|
| T |
1965496 |
ctacaaagactatatctcaattaacactcaagtggagaaatttggt |
1965541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 24 - 179
Target Start/End: Complemental strand, 2007683 - 2007528
Alignment:
| Q |
24 |
atcaagtgtctcatggaaggggaagaaggcgggaaactgcgcaaaaatatgaaggaattaaaagaatctgctaatagtgcacataaagatgatggatctt |
123 |
Q |
| |
|
||||||| |||||||||||| || || || | |||| | ||||| || |||||||||||||||||| ||||| | |||| ||||| ||||| |||| |
|
|
| T |
2007683 |
atcaagtatctcatggaaggagacgagggtgagaaattacgcaataacatgaaggaattaaaagaagctgcttcaaatgcagtcaaagaagatggttctt |
2007584 |
T |
|
| Q |
124 |
ttacaaagacactttctcaattagcactcaagtggagaaatttggtatagaaaaac |
179 |
Q |
| |
|
|||||| || |||||||| ||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
2007583 |
ctacaaaaactatttctcaaatagcacttaagtggagaaatttggtgtagaaaaac |
2007528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 184
Target Start/End: Original strand, 2437177 - 2437292
Alignment:
| Q |
69 |
aatatgaaggaattaaaagaatctgctaatagtgcacataaagatgatggatcttttacaaagacactttctcaattagcactcaagtggagaaatttgg |
168 |
Q |
| |
|
|||||||| ||| |||||||| ||||| || ||||| ||||| ||||| |||| |||||||| ||||||||||| ||||||||||||||| |||| |
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|
| T |
2437177 |
aatatgaaagaactaaaagaagctgcttctaatgcactcaaagaagatggttcttcgacaaagactatttctcaattaacactcaagtggagaagcttgg |
2437276 |
T |
|
| Q |
169 |
tatagaaaaacaagtt |
184 |
Q |
| |
|
| || |||||||||| |
|
|
| T |
2437277 |
tgcaggaaaacaagtt |
2437292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 466 - 499
Target Start/End: Original strand, 1963911 - 1963944
Alignment:
| Q |
466 |
atcaccttatttggccttatattttacagtttac |
499 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
1963911 |
atcaccttatttggccttatatttcacagtttac |
1963944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 24 - 169
Target Start/End: Original strand, 5906386 - 5906531
Alignment:
| Q |
24 |
atcaagtgtctcatggaaggggaagaaggcgggaaactgcgcaaaaatatgaaggaattaaaagaatctgctaatagtgcacataaagatgatggatctt |
123 |
Q |
| |
|
||||||||||||||||||||||||||| | | |||| ||||||| |||||||||||||| |||||| | |||| || ||||| | |||| ||||| |||| |
|
|
| T |
5906386 |
atcaagtgtctcatggaaggggaagaatgtgagaaattgcgcaataatatgaaggaattgaaagaagcagctactaatgcacttcaagaagatgggtctt |
5906485 |
T |
|
| Q |
124 |
ttacaaagacactttctcaattagcactcaagtggagaaatttggt |
169 |
Q |
| |
|
|| |||||| ||||||||||||||| |||||||| ||||||||| |
|
|
| T |
5906486 |
ctagaaagactgtttctcaattagcacacaagtggaaaaatttggt |
5906531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 24 - 169
Target Start/End: Original strand, 5902902 - 5903047
Alignment:
| Q |
24 |
atcaagtgtctcatggaaggggaagaaggcgggaaactgcgcaaaaatatgaaggaattaaaagaatctgctaatagtgcacataaagatgatggatctt |
123 |
Q |
| |
|
|||||| ||||||||||||| |||||| | | ||| ||||||| ||||||||||||||||||||| || ||| || ||| | ||||| || || |||| |
|
|
| T |
5902902 |
atcaagggtctcatggaaggagaagaatgtgagaatttgcgcaataatatgaaggaattaaaagaagcttctactaatgcgctcaaagaagacgggtctt |
5903001 |
T |
|
| Q |
124 |
ttacaaagacactttctcaattagcactcaagtggagaaatttggt |
169 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5903002 |
ctagaaagaccatttctcaattagcactcaagtggagaaatttggt |
5903047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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