View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5728-Insertion-4 (Length: 570)
Name: NF5728-Insertion-4
Description: NF5728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5728-Insertion-4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 28 - 311
Target Start/End: Original strand, 8218871 - 8219154
Alignment:
| Q |
28 |
gccgattacgaacaaattctgtataagatgtatattaaatatgttcaaggcaagtgatcagtgacagagtacacggctgaatttttgtgtttttctgaac |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8218871 |
gccgattacgaacaaattctgtataagatgtatattaaatatgttcaaggcaagtgatcagtgacagagtacacggctgaatttttgtgtttttctgaac |
8218970 |
T |
|
| Q |
128 |
ataatgaattgggcgaatccaagaatcataaagtggctcgttacattagtggtttgaaaggatccttgcaagggaagaggggattgcaaactgtttggac |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8218971 |
ataatgaattgggcgaatccaagaatcataaagtggctcgttacattagtggtttgaaaggatccttgcaagggaagaggggattgcaaactgtttggac |
8219070 |
T |
|
| Q |
228 |
cgttgctgaagcgtccaacagtacttaggcatcaggtgacaaaaagaagagtgcgacaccaaagattcaaatcttattaataag |
311 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8219071 |
cgttgctgaagcgtccaacagtatttaggcatcaggtgacaaaaagaagagtgcggcaccaaagattcaaatcttattaataag |
8219154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 310 - 570
Target Start/End: Original strand, 8219217 - 8219471
Alignment:
| Q |
310 |
aggcccaccggtgatacttgttacagatgtaatgggaagggacggtgatgatgaatatgaatatgaatatgcagaggctgaatttgctgaagaaaagaag |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8219217 |
aggcccaccggtgatacttgttacagatgtaatgggaagggatggtgatgatga------atatgaatatgcagaggctgaatttgctgaagaaaagaag |
8219310 |
T |
|
| Q |
410 |
tttggtttgaaattctcatctagtcactggctgatggcacctccgccaccagaaccaccagacaaggttaaggttgacgcatccgtgtcctcaagaaaca |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8219311 |
tttggtttgaaattctcatctagtcactggctgatggcacctccgccaccagaaccaccagacaaggttaaggttgacgcatccgtgtcctcaagaaaca |
8219410 |
T |
|
| Q |
510 |
tccactgtgctgctattaaggagagtttgctgcagaccataccggtagagtttctttcttt |
570 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8219411 |
tccactttgctgctattaaggagagtttgctgcagaccataccggtagagtttctttcttt |
8219471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 2e-63; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 31 - 246
Target Start/End: Original strand, 30048369 - 30048584
Alignment:
| Q |
31 |
gattacgaacaaattctgtataagatgtatattaaatatgttcaaggcaagtgatcagtgacagagtacacggctgaatttttgtgtttttctgaacata |
130 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||||| ||| |||||| |||||| |||||||||| |||||||||||||||||||||||||||||| ||| || |
|
|
| T |
30048369 |
gattatgaacagattctatataagatgtatattgaatgtgttcagggcaagcgatcagtgactgagtacacggctgaatttttgtgtttttctaaacgta |
30048468 |
T |
|
| Q |
131 |
atgaattgggcgaatccaagaatcataaagtggctcgttacattagtggtttgaaaggatccttgcaagggaagaggggattgcaaactgtttggaccgt |
230 |
Q |
| |
|
||||||| ||||| ||| ||||||| || ||||||||||| ||||||||||||||| | || ||||||| ||||| |||||| || |||||||||||||| |
|
|
| T |
30048469 |
atgaattaggcgagtccgagaatcagaaggtggctcgttatattagtggtttgaaaagttcattgcaagagaagatgggattacagactgtttggaccgt |
30048568 |
T |
|
| Q |
231 |
tgctgaagcgtccaac |
246 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
30048569 |
tgctgaagcgtccaac |
30048584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 31 - 246
Target Start/End: Original strand, 30050656 - 30050871
Alignment:
| Q |
31 |
gattacgaacaaattctgtataagatgtatattaaatatgttcaaggcaagtgatcagtgacagagtacacggctgaatttttgtgtttttctgaacata |
130 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||||| ||| |||||| |||||| |||||||||| |||||||||||||||||||||||||||||| ||| || |
|
|
| T |
30050656 |
gattatgaacagattctatataagatgtatattgaatgtgttcagggcaagcgatcagtgactgagtacacggctgaatttttgtgtttttctaaacgta |
30050755 |
T |
|
| Q |
131 |
atgaattgggcgaatccaagaatcataaagtggctcgttacattagtggtttgaaaggatccttgcaagggaagaggggattgcaaactgtttggaccgt |
230 |
Q |
| |
|
||||||| ||||| ||| ||||||| || ||||||||||| ||||||||||||||| | || ||||||| ||||| |||||| || |||||||||||||| |
|
|
| T |
30050756 |
atgaattaggcgagtccgagaatcagaaggtggctcgttatattagtggtttgaaaagttcattgcaagagaagatgggattacagactgtttggaccgt |
30050855 |
T |
|
| Q |
231 |
tgctgaagcgtccaac |
246 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
30050856 |
tgctgaagcgtccaac |
30050871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 31 - 246
Target Start/End: Original strand, 3536756 - 3536971
Alignment:
| Q |
31 |
gattacgaacaaattctgtataagatgtatattaaatatgttcaaggcaagtgatcagtgacagagtacacggctgaatttttgtgtttttctgaacata |
130 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||||| ||| |||||| |||||| |||||||||| ||||||||||||||||||||| |||||||||||| || |
|
|
| T |
3536756 |
gattatgaacagattctatataagatgtatattgaatgtgttcagggcaagcgatcagtgactgagtacacggctgaatttttgcgtttttctgaacgta |
3536855 |
T |
|
| Q |
131 |
atgaattgggcgaatccaagaatcataaagtggctcgttacattagtggtttgaaaggatccttgcaagggaagaggggattgcaaactgtttggaccgt |
230 |
Q |
| |
|
| ||||| ||||| ||| ||||||| || ||||||||||| ||||||||||||||| | || ||||||| ||||| || ||| || |||||||| ||||| |
|
|
| T |
3536856 |
acgaattaggcgagtccgagaatcagaaggtggctcgttatattagtggtttgaaaagttcattgcaagagaagatggaattacagactgtttgtaccgt |
3536955 |
T |
|
| Q |
231 |
tgctgaagcgtccaac |
246 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
3536956 |
tgctgaagcgtccaac |
3536971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 2e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 31 - 246
Target Start/End: Complemental strand, 32163167 - 32162952
Alignment:
| Q |
31 |
gattacgaacaaattctgtataagatgtatattaaatatgttcaaggcaagtgatcagtgacagagtacacggctgaatttttgtgtttttctgaacata |
130 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||| ||| |||| | ||||| ||||| ||||||||||||| |||| |||| |||||||||||| || |
|
|
| T |
32163167 |
gattacgaacaaattttgtataatatgtatattgaatgtgtttagggcaaccgatcaatgacagagtacacacatgaaattttccgtttttctgaacgta |
32163068 |
T |
|
| Q |
131 |
atgaattgggcgaatccaagaatcataaagtggctcgttacattagtggtttgaaaggatccttgcaagggaagaggggattgcaaactgtttggaccgt |
230 |
Q |
| |
|
|| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
32163067 |
ataaattgggcaaatccaagaatcagaaagtggctcgttacattagtggtttgaaaggatccttgcaagaaaagatgggattgcaaactgtttggaccgt |
32162968 |
T |
|
| Q |
231 |
tgctgaagcgtccaac |
246 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
32162967 |
tgctgaagtgtccaac |
32162952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 31 - 242
Target Start/End: Original strand, 2156700 - 2156911
Alignment:
| Q |
31 |
gattacgaacaaattctgtataagatgtatattaaatatgttcaaggcaagtgatcagtgacagagtacacggctgaatttttgtgtttttctgaacata |
130 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| | ||| |||||| |||||| |||||||||| ||||||||||||||||||||| ||||||||||| || |
|
|
| T |
2156700 |
gattatgaacaaattctatataagatgtatactgaatgtgttcagggcaagcgatcagtgactgagtacacggctgaatttttgcgtttttctgaatgta |
2156799 |
T |
|
| Q |
131 |
atgaattgggcgaatccaagaatcataaagtggctcgttacattagtggtttgaaaggatccttgcaagggaagaggggattgcaaactgtttggaccgt |
230 |
Q |
| |
|
||||||| ||| | ||| ||||||| || ||||||| ||| ||||||||||||||| | || ||||||| ||||| |||||| | ||| |||||||||| |
|
|
| T |
2156800 |
atgaattaggcaagtccgagaatcagaaggtggctcattatattagtggtttgaaaagttcattgcaagagaagatgggattaccgactatttggaccgt |
2156899 |
T |
|
| Q |
231 |
tgctgaagcgtc |
242 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2156900 |
tgctgaagcgtc |
2156911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 31 - 246
Target Start/End: Complemental strand, 22926003 - 22925788
Alignment:
| Q |
31 |
gattacgaacaaattctgtataagatgtatattaaatatgttcaaggcaagtgatcagtgacagagtacacggctgaatttttgtgtttttctgaacata |
130 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||||| ||| |||||| |||||| |||||||||| |||||||||||||| |||||| |||||||||||| || |
|
|
| T |
22926003 |
gattatgaacagattctatataagatgtatattgaatgtgttcagggcaagcgatcagtgactgagtacacggctgagtttttgcgtttttctgaacgta |
22925904 |
T |
|
| Q |
131 |
atgaattgggcgaatccaagaatcataaagtggctcgttacattagtggtttgaaaggatccttgcaagggaagaggggattgcaaactgtttggaccgt |
230 |
Q |
| |
|
||||||| ||||| || |||||||||| |||||| |||| |||| |||||||||| | || ||||||| ||||| |||||| || |||||||||||||| |
|
|
| T |
22925903 |
atgaattaggcgagtctgagaatcataaggtggctggttatattaatggtttgaaaagttcattgcaagagaagatgggattacagactgtttggaccgt |
22925804 |
T |
|
| Q |
231 |
tgctgaagcgtccaac |
246 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
22925803 |
tgctgaagcgtccaac |
22925788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 133 - 242
Target Start/End: Complemental strand, 22571727 - 22571618
Alignment:
| Q |
133 |
gaattgggcgaatccaagaatcataaagtggctcgttacattagtggtttgaaaggatccttgcaagggaagaggggattgcaaactgtttggaccgttg |
232 |
Q |
| |
|
||||||||||| | ||||||| ||| |||||||||| |||||||| |||||||| || ||||||| ||||| ||||||||| || ||||||| ||||| |
|
|
| T |
22571727 |
gaattgggcgagcctgagaatcagaaaatggctcgttatattagtggattgaaaggttcgttgcaagagaagatgggattgcagaccgtttggatcgttg |
22571628 |
T |
|
| Q |
233 |
ctgaagcgtc |
242 |
Q |
| |
|
||||||||| |
|
|
| T |
22571627 |
ttgaagcgtc |
22571618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 102
Target Start/End: Complemental strand, 22571804 - 22571733
Alignment:
| Q |
31 |
gattacgaacaaattctgtataagatgtatattaaatatgttcaaggcaagtgatcagtgacagagtacacg |
102 |
Q |
| |
|
||||| || |||||| ||||||||||||||||| ||| |||| | |||||||||||| |||||||||||||| |
|
|
| T |
22571804 |
gattatgatcaaattttgtataagatgtatattgaatgtgtttagggcaagtgatcaatgacagagtacacg |
22571733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University