View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5728-Insertion-5 (Length: 514)

Name: NF5728-Insertion-5
Description: NF5728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5728-Insertion-5
NF5728-Insertion-5
[»] chr4 (6 HSPs)
chr4 (171-391)||(4167473-4167692)
chr4 (8-92)||(4167311-4167395)
chr4 (448-514)||(4167749-4167815)
chr4 (8-90)||(4174309-4174391)
chr4 (220-371)||(4174669-4174826)
chr4 (470-514)||(4174914-4174958)
[»] chr3 (4 HSPs)
chr3 (270-359)||(10018774-10018863)
chr3 (270-359)||(10123314-10123403)
chr3 (304-361)||(10180005-10180062)
chr3 (270-359)||(10256088-10256177)
[»] chr7 (4 HSPs)
chr7 (305-361)||(23613771-23613827)
chr7 (319-361)||(23613717-23613759)
chr7 (273-353)||(8083389-8083469)
chr7 (273-353)||(41832664-41832744)
[»] chr6 (1 HSPs)
chr6 (273-361)||(24249770-24249858)
[»] chr5 (2 HSPs)
chr5 (273-353)||(21254206-21254286)
chr5 (273-353)||(21256678-21256758)


Alignment Details
Target: chr4 (Bit Score: 175; Significance: 5e-94; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 171 - 391
Target Start/End: Original strand, 4167473 - 4167692
Alignment:
Q  171 tgaagaatttacgtttcaatttcaaattagacagcgaattattatcaa-tttcaatgatttttacatggttgatttcatatgaaacttaatcgttgatca 269  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| | ||||||||||||||||||||| ||||||||||    
T  4167473 tgaagaatttacgtttcaatttcaaattagacagcaaattattatcaaatttcaatgatttttacctcgttgatttcatatgaaacttagtcgttgatca 4167572  T
Q  270 tgttgttacgaaacgtggcatcaatagaagaaatgagagaaaagttactaactctttttatcgatgaaaataaaatattacaaatgagtgaacatatacc 369  Q
    |  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  4167573 t--tgttacgaaacgtggcatcaatagaaggaatgagagaaaagttactaactctttttatcgatgaaaatagaatattacaaatgaatgaacatatacc 4167670  T
Q  370 ttctaataagaggtggttacaa 391  Q
    ||||||||||||||||||||||    
T  4167671 ttctaataagaggtggttacaa 4167692  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 4167311 - 4167395
Alignment:
Q  8 ggtcctttgagatttagagcttgcaaaagatggaaagttgtgaacatgtctaataagggggtgttcccataataacattctaggg 92  Q
    |||||||||||||| ||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||    
T  4167311 ggtcctttgagattcagagcttgcaaaagatggaaagtggagaacatgtctaataagagggtgttcccataataacattctaggg 4167395  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 448 - 514
Target Start/End: Original strand, 4167749 - 4167815
Alignment:
Q  448 gtacgtggaatgttagaaacttagaaacttagccaagatctttcacattatttccttatgatttttt 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4167749 gtacgtggaatgttagaaacttagaaacttagccaagatctttcacattatttccttatgatttttt 4167815  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 4174309 - 4174391
Alignment:
Q  8 ggtcctttgagatttagagcttgcaaaagatggaaagttgtgaacatgtctaataagggggtgttcccataataacattctag 90  Q
    |||||||||||||| | ||||||||||||||||||||| |||||||| |||||||||| ||||||||||| |||| |||||||    
T  4174309 ggtcctttgagattcaaagcttgcaaaagatggaaagtggtgaacatatctaataaggaggtgttcccatgataatattctag 4174391  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 220 - 371
Target Start/End: Original strand, 4174669 - 4174826
Alignment:
Q  220 ttcaatgatttttacatggttgatttcatatgaaacttaatcgttga------tcatgttgttacgaaacgtggcatcaatagaagaaatgagagaaaag 313  Q
    ||||||||||||||| |  |||||||||||||||||||| |||| ||      ||||||||||| ||||| |  |||  ||| ||  |||||||||||||    
T  4174669 ttcaatgatttttacctcattgatttcatatgaaacttagtcgtcgaggtcgatcatgttgttatgaaacattacattcatataaagaatgagagaaaag 4174768  T
Q  314 ttactaactctttttatcgatgaaaataaaatattacaaatgagtgaacatatacctt 371  Q
    |||  |||||||| |||  ||||||||| ||||||||||||||||||||| |||||||    
T  4174769 ttagaaactctttgtattaatgaaaatagaatattacaaatgagtgaacaaatacctt 4174826  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 470 - 514
Target Start/End: Original strand, 4174914 - 4174958
Alignment:
Q  470 agaaacttagccaagatctttcacattatttccttatgatttttt 514  Q
    |||||||||||||||||||| |||||||||| |||||||||||||    
T  4174914 agaaacttagccaagatcttccacattattttcttatgatttttt 4174958  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 270 - 359
Target Start/End: Original strand, 10018774 - 10018863
Alignment:
Q  270 tgttgttacgaaacgtggcatcaatagaagaaatgagagaaaagttactaactctttttatcgatgaaaataaaatattacaaatgagtg 359  Q
    |||||||| ||||| ||||||| || |||  || ||||||||| | || |||||||| ||| |||| |||| ||||||||||||||||||    
T  10018774 tgttgttaggaaacatggcatccatggaaagaaggagagaaaactaacaaactctttgtattgatggaaatgaaatattacaaatgagtg 10018863  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 359
Target Start/End: Original strand, 10123314 - 10123403
Alignment:
Q  270 tgttgttacgaaacgtggcatcaatagaagaaatgagagaaaagttactaactctttttatcgatgaaaataaaatattacaaatgagtg 359  Q
    |||||||| ||||| ||||||| ||  ||  || ||||||||| | || |||||||| ||| |||| |||| ||||||||||||||||||    
T  10123314 tgttgttaggaaacatggcatccatgaaaagaaggagagaaaactaacaaactctttgtattgatggaaatgaaatattacaaatgagtg 10123403  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 361
Target Start/End: Original strand, 10180005 - 10180062
Alignment:
Q  304 gagagaaaagttactaactctttttatcgatgaaaataaaatattacaaatgagtgaa 361  Q
    ||||||||| | || |||||||| ||| |||| |||| ||||||||||||||||||||    
T  10180005 gagagaaaactaacaaactctttgtattgatggaaatgaaatattacaaatgagtgaa 10180062  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 359
Target Start/End: Original strand, 10256088 - 10256177
Alignment:
Q  270 tgttgttacgaaacgtggcatcaatagaagaaatgagagaaaagttactaactctttttatcgatgaaaataaaatattacaaatgagtg 359  Q
    |||||||| ||||| ||||||| || |||  || ||||||||| | || |||| ||| ||| |||| |||| ||||||||||||||||||    
T  10256088 tgttgttaggaaacatggcatccatggaaagaaggagagaaaactaacaaactttttgtattgatggaaatgaaatattacaaatgagtg 10256177  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 23613827 - 23613771
Alignment:
Q  305 agagaaaagttactaactctttttatcgatgaaaataaaatattacaaatgagtgaa 361  Q
    |||||||| | || |||||||||||| |||| |||| ||||||||||||||||||||    
T  23613827 agagaaaactaacaaactctttttattgatggaaatgaaatattacaaatgagtgaa 23613771  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 361
Target Start/End: Complemental strand, 23613759 - 23613717
Alignment:
Q  319 aactctttttatcgatgaaaataaaatattacaaatgagtgaa 361  Q
    |||||||||||| |||| |||| ||||||||||||||||||||    
T  23613759 aactctttttattgatggaaatgaaatattacaaatgagtgaa 23613717  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 353
Target Start/End: Original strand, 8083389 - 8083469
Alignment:
Q  273 tgttacgaaacgtggcatcaatagaagaaatgagagaaaagttactaactctttttatcgatgaaaataaaatattacaaa 353  Q
    ||||| ||||| ||||||| || |||| || ||||||||| | |  |||||||| ||| ||||||||| ||||||||||||    
T  8083389 tgttaggaaacatggcatccatggaaggaaggagagaaaactaaaaaactctttctattgatgaaaatgaaatattacaaa 8083469  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 353
Target Start/End: Complemental strand, 41832744 - 41832664
Alignment:
Q  273 tgttacgaaacgtggcatcaatagaagaaatgagagaaaagttactaactctttttatcgatgaaaataaaatattacaaa 353  Q
    ||||| ||||| ||||||| || |||| |||||||||||| | |  |||||||| ||| |||||||||  |||||||||||    
T  41832744 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaattgaatattacaaa 41832664  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 361
Target Start/End: Complemental strand, 24249858 - 24249770
Alignment:
Q  273 tgttacgaaacgtggcatcaatagaagaaatgagagaaaagttactaactctttttatcgatgaaaataaaatattacaaatgagtgaa 361  Q
    ||||| ||||| ||||||||||  ||  |||||||||||| | || |||||||| |||  ||| ||||  |||||||||||||||||||    
T  24249858 tgttaggaaacatggcatcaatgtaaagaatgagagaaaactaacaaactctttgtattaatggaaatggaatattacaaatgagtgaa 24249770  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 353
Target Start/End: Complemental strand, 21254286 - 21254206
Alignment:
Q  273 tgttacgaaacgtggcatcaatagaagaaatgagagaaaagttactaactctttttatcgatgaaaataaaatattacaaa 353  Q
    ||||| ||||| ||||||| || |||| || ||||||||||| || |||||||| ||| ||||||||   |||||||||||    
T  21254286 tgttaggaaacatggcatccatggaaggaaggagagaaaagtaacaaactctttctattgatgaaaaaggaatattacaaa 21254206  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 353
Target Start/End: Complemental strand, 21256758 - 21256678
Alignment:
Q  273 tgttacgaaacgtggcatcaatagaagaaatgagagaaaagttactaactctttttatcgatgaaaataaaatattacaaa 353  Q
    ||||| ||||| ||||||| || |||| || ||||||||| | || |||||||| ||| |||||||||  |||||||||||    
T  21256758 tgttaggaaacatggcatccatggaaggaaggagagaaaactaacaaactctttctattgatgaaaatggaatattacaaa 21256678  T

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