View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5728_high_8 (Length: 242)

Name: NF5728_high_8
Description: NF5728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5728_high_8
NF5728_high_8
[»] chr8 (11 HSPs)
chr8 (11-224)||(2018097-2018310)
chr8 (11-224)||(2014714-2014927)
chr8 (11-219)||(2436914-2437122)
chr8 (11-224)||(1963502-1963715)
chr8 (13-214)||(1969116-1969317)
chr8 (13-219)||(2004319-2004525)
chr8 (13-219)||(2007699-2007905)
chr8 (13-187)||(2011346-2011520)
chr8 (13-187)||(1965174-1965348)
chr8 (61-162)||(10201811-10201912)
chr8 (61-162)||(10208884-10208985)
[»] chr1 (2 HSPs)
chr1 (13-214)||(5906164-5906365)
chr1 (29-214)||(5902696-5902881)
[»] chr6 (2 HSPs)
chr6 (11-89)||(845007-845085)
chr6 (11-89)||(870291-870369)


Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 2018310 - 2018097
Alignment:
Q  11 cacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2018310 cacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaat 2018211  T
Q  111 cacatggcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaaaaattaatcagaatggcattgtg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2018210 cacatggcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaaaaattaatcagaatggcattgtg 2018111  T
Q  211 gaaaaggtacaaat 224  Q
    ||||||||||||||    
T  2018110 gaaaaggtacaaat 2018097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 2014927 - 2014714
Alignment:
Q  11 cacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2014927 cacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaatgcttgagagtgtgttgcatggtgtgccactaat 2014828  T
Q  111 cacatggcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaaaaattaatcagaatggcattgtg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2014827 cacatggcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaaaaattaatcagaatggcattgtg 2014728  T
Q  211 gaaaaggtacaaat 224  Q
    ||||||||||||||    
T  2014727 gaaaaggtacaaat 2014714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 219
Target Start/End: Original strand, 2436914 - 2437122
Alignment:
Q  11 cacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaat 110  Q
    ||||| ||||||||||| ||||||| ||||||||||| ||||||| ||||||||| ||||||||||| |||||||||||| |||||||||||||||||||    
T  2436914 cacaggttcaaatccttagtcacagatcagttggtggtttcttgagtcactgtggctggaattcaacccttgagagtgtggtgcatggtgtgccactaat 2437013  T
Q  111 cacatggcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaaaaattaatcagaatggcattgtg 210  Q
    |||||||||||| ||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| | || || | ||||||||||||    
T  2437014 cacatggcctctttttgccgagcagagaacgaattcggttttgttgagtgagggactaaaagtgggactgaggccaagagttcatgaaaatggcattgtg 2437113  T
Q  211 gaaaaggta 219  Q
    |||| ||||    
T  2437114 gaaagggta 2437122  T

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Target: chr8; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 1963502 - 1963715
Alignment:
Q  11 cacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaat 110  Q
    ||||||||||||||||| ||||||||||  |||||||||| ||| |||| ||||||||||||||||| |||||||||||| || ||||||||||||||||    
T  1963502 cacagattcaaatccttagtcacagttccattggtgggtttttgtctcattgtggttggaattcaacccttgagagtgtggtgtatggtgtgccactaat 1963601  T
Q  111 cacatggcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaaaaattaatcagaatggcattgtg 210  Q
    ||| |||||||| | ||||||||||||||| ||||| |||||| |  ||||||| |||||||||||||||||||||| | ||||  ||||||||||||||    
T  1963602 cacttggcctctgtatgctgagcagagaacaaatgcagttttgctctgtgaaggcctaaaagtgggactgaggccaagagttaacgagaatggcattgtg 1963701  T
Q  211 gaaaaggtacaaat 224  Q
    |||| |||| ||||    
T  1963702 gaaagggtagaaat 1963715  T

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Target: chr8; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 1969116 - 1969317
Alignment:
Q  13 cagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatca 112  Q
    ||||||||||||||  ||||||  ||| ||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  1969116 cagattcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaacccttgagagtgtgttgcatggtgtgccactaatca 1969215  T
Q  113 catggcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaaaaattaatcagaatggcattgtgga 212  Q
    |||||||| | ||||||||||||| || |||||| |||||| |||||||||| |||||||||||||||||||||| | ||||| | || |||||||||||    
T  1969216 catggcctttgtttgctgagcagaaaatgaatgccgttttgctgagtgaaggcctaaaagtgggactgaggccaagagttaatgaaaacggcattgtgga 1969315  T
Q  213 aa 214  Q
    ||    
T  1969316 aa 1969317  T

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Target: chr8; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 2004525 - 2004319
Alignment:
Q  13 cagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatca 112  Q
    ||||||||||||||  ||||||  ||||| || |||||||||||||| ||||| ||||||||||| || ||||||||| ||||||||||||||||||| |    
T  2004525 cagattcaaatcctaagtcacaactcagtcggcgggttcttgactcattgtggctggaattcaaccctagagagtgtggtgcatggtgtgccactaataa 2004426  T
Q  113 catggcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaaaaattaatcagaatggcattgtgga 212  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||| |||   ||||| | |||||||| |||||    
T  2004425 catggcctctatttgctgagcagaaaatgaatgcggttttgttgagtgaaggactaaaagtgggattgagggcaagtgttaatgaaaatggcatagtgga 2004326  T
Q  213 aaaggta 219  Q
    || ||||    
T  2004325 aagggta 2004319  T

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Target: chr8; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 2007905 - 2007699
Alignment:
Q  13 cagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatca 112  Q
    ||||||||||||||  ||||||  |||||||||||||||||||| || ||||| ||||||||||| |||||||||||| |||| ||||||||  ||||||    
T  2007905 cagattcaaatcctaagtcacaactcagttggtgggttcttgacgcattgtggctggaattcaacccttgagagtgtggtgcacggtgtgccgttaatca 2007806  T
Q  113 catggcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaaaaattaatcagaatggcattgtgga 212  Q
    | |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||   ||||| | |||||||| |||||    
T  2007805 cgtggcctctatttgctgagcagaaaatgaatgcggttttgttgagtgaaggactaaaagtgggactgagggcaagtgttaatgaaaatggcatagtgga 2007706  T
Q  213 aaaggta 219  Q
    || ||||    
T  2007705 aagggta 2007699  T

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Target: chr8; HSP #8
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 2011520 - 2011346
Alignment:
Q  13 cagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatca 112  Q
    ||||||||||||||| |||| ||||||||||| |||||||||| ||||||||||||||  ||||| ||||| |||||| | ||||| |||||||||||||    
T  2011520 cagattcaaatccttagtcatagttcagttggcgggttcttgagtcactgtggttggagctcaacacttgaaagtgtggttcatggggtgccactaatca 2011421  T
Q  113 catggcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaa 187  Q
    |||||||| | |||||||| ||| ||| |||||| |||||| ||| ||| || || |||||||||||||||||||    
T  2011420 catggcctatgtttgctgaacagggaatgaatgcagttttggtgactgagggccttaaagtgggactgaggccaa 2011346  T

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Target: chr8; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 1965174 - 1965348
Alignment:
Q  13 cagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatca 112  Q
    ||||||||||||||| |||| |||||| |||| |||||||||| ||||||||||||||| ||||| ||||| |||||| ||||||| |||||||||||||    
T  1965174 cagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccactaatca 1965273  T
Q  113 catggcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaa 187  Q
    |||||||| | |||||||| ||| ||| |||||| |||||| ||| ||  || || |||||||||||||| ||||    
T  1965274 catggcctatgtttgctgaacagggaatgaatgcagttttggtgactgggggccttaaagtgggactgagaccaa 1965348  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 162
Target Start/End: Complemental strand, 10201912 - 10201811
Alignment:
Q  61 tgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatggcctctatttgctgagcagagaacgaatgcggttttgttgagtg 160  Q
    ||||||||||||||||| |||||||||||| || ||||||||||  | ||  ||||||| || | ||||||||| |  | |||||| ||||| |||||||    
T  10201912 tgtggttggaattcaactcttgagagtgtggtgaatggtgtgcctttgattgcatggccactctatgctgagcaaaagatgaatgctgttttattgagtg 10201813  T
Q  161 aa 162  Q
    ||    
T  10201812 aa 10201811  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 162
Target Start/End: Complemental strand, 10208985 - 10208884
Alignment:
Q  61 tgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatggcctctatttgctgagcagagaacgaatgcggttttgttgagtg 160  Q
    ||||||||||||||||| |||||||||||| || ||||||||||  | ||  ||||||| || | ||||||||| |  | |||||| ||||| |||||||    
T  10208985 tgtggttggaattcaactcttgagagtgtggtgaatggtgtgcctttgattgcatggccactctatgctgagcaaaagatgaatgctgttttattgagtg 10208886  T
Q  161 aa 162  Q
    ||    
T  10208885 aa 10208884  T

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Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 5906164 - 5906365
Alignment:
Q  13 cagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatca 112  Q
    |||||| |||||||| ||||||  ||||||||||| ||||||| ||| |||||||||| |||||  |||||||| | | |||||||||||||||||||||    
T  5906164 cagattgaaatccttagtcacatatcagttggtggattcttgagtcattgtggttggagttcaatccttgagagcgcgatgcatggtgtgccactaatca 5906263  T
Q  113 catggcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaaaaattaatcagaatggcattgtgga 212  Q
    |||||||||| |||||||||||||||| ||||||  || || ||||||| || ||||| |||||| ||||||||| | ||||| | ||||||||||||||    
T  5906264 catggcctctgtttgctgagcagagaatgaatgcatttgtgctgagtgagggcctaaaggtgggagtgaggccaagagttaatgaaaatggcattgtgga 5906363  T
Q  213 aa 214  Q
    ||    
T  5906364 aa 5906365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 29 - 214
Target Start/End: Original strand, 5902696 - 5902881
Alignment:
Q  29 gtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatggcctctatttgc 128  Q
    ||||||| ||||||||||| ||||||| ||||||||| ||||||||||  |||||||||||| ||||||||||||||||||||||||||||| | ||||     
T  5902696 gtcacagatcagttggtggattcttgagtcactgtggctggaattcaatccttgagagtgtgatgcatggtgtgccactaatcacatggcctttgtttgg 5902795  T
Q  129 tgagcagagaacgaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaaaaattaatcagaatggcattgtggaaa 214  Q
    |||||| |||| |||||| ||| || ||||||| || || |||||||||||||||||||   ||||| | ||||||||||| ||||    
T  5902796 tgagcaaagaatgaatgcagttgtgctgagtgagggccttaaagtgggactgaggccaagggttaatgataatggcattgttgaaa 5902881  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 845085 - 845007
Alignment:
Q  11 cacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgt 89  Q
    |||| ||| |||| ||| |||| |||||| |||||||||| || ||||| ||||||||||||||||| ||||| |||||    
T  845085 cacaaattgaaattcttggtcatagttcaattggtgggtttttaactcattgtggttggaattcaacacttgaaagtgt 845007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 870369 - 870291
Alignment:
Q  11 cacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgt 89  Q
    |||| ||| |||| ||| |||| |||||| |||||||||| || ||||| ||||||||||||||||| ||||| |||||    
T  870369 cacaaattgaaattcttggtcatagttcaattggtgggtttttaactcattgtggttggaattcaacacttgaaagtgt 870291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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