View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5728_low_1 (Length: 606)
Name: NF5728_low_1
Description: NF5728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5728_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 20 - 465
Target Start/End: Original strand, 48176046 - 48176487
Alignment:
| Q |
20 |
ctcacactagctaccactttatcatagtcaatggatgatttcaaatgcttattctcnnnnnnn---caactcaatctgatttagaacattaaagcttttg |
116 |
Q |
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| T |
48176046 |
ctcacactagctaccactttatcatagtcaatggatgatttcaaatgcttattctcttttttttttcaactcaatctgatttagaatattaaagcttttg |
48176145 |
T |
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| Q |
117 |
cttttgaaaagatattgatcttagttgcacatgga----tagctattcaaaatccttttggggggatggtcttgagaagaatcatgaatcaatgatggct |
212 |
Q |
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| T |
48176146 |
cttttgaaaagatattgatcttagttgcacatggatagctagctattcaaaatccttttggggggatggtcttgagaagaatcatgaatcaatg------ |
48176239 |
T |
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| Q |
213 |
atggctggttgggtaagagggcagcttggtgggttgctgtctctggaccctggaaattgaatatgatatatcaattgataaaaacaagtgattcttctat |
312 |
Q |
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| T |
48176240 |
atggctggttgggtaagagggcagcttggtgggttgctgtctctggaccctggaaattgaaaatgatatatcaattgataaaaacaagtgattattctat |
48176339 |
T |
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| Q |
313 |
aatccaattgcctc-nnnnnnnatttctcgtttattcatttacttcttttcttcctaaaataaatctaaatcaacaaagggcccagctgagagcaccagc |
411 |
Q |
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| T |
48176340 |
aatccaattgcctcttttttttatttctcgtttattcatttacttcttttcttcctaaaataaatc---at--acaaagggcccagctgagagcaccagc |
48176434 |
T |
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| Q |
412 |
ttcgtatgctttcagattatttttcattaaaagaaaaatactttattaatagtt |
465 |
Q |
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| T |
48176435 |
ttcgtatgctttcagattatttttcattaaaa-aaaaatactttattaatagtt |
48176487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 442 - 596
Target Start/End: Original strand, 48176534 - 48176688
Alignment:
| Q |
442 |
aagaaaaatactttattaatagttgtctattctcatattggtaaatgccgattcgacttattatagcatagcctcgtttgatttcttttgaccaatagta |
541 |
Q |
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| T |
48176534 |
aagaaaaatactttattaatagttgtctattctcatattggtcaatgccggttcgacttattatagcatagccttgtttgatttcttttgaccaatagta |
48176633 |
T |
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| Q |
542 |
acattgttgatcttgcaatgatgtttcttttgtcttgaccctcctagcagtatta |
596 |
Q |
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| T |
48176634 |
acattgttgatcttgcaatgatgtttcttttgtcttgaccctcctagcattatta |
48176688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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