View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5728_low_11 (Length: 213)
Name: NF5728_low_11
Description: NF5728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5728_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 15715893 - 15715708
Alignment:
| Q |
19 |
gtacagggagtgatttatgcccaagccattttggaaaatgtattccaaaccctcctatttaagttcgatttcaaaattaaatcttgtataaagttggtct |
118 |
Q |
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| T |
15715893 |
gtacagggagtgatttatgcccaagccattttggaaaatgtattccaaaccctcctatttaagttcgatttgaaaattaaatcttgtataaagttggtct |
15715794 |
T |
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| Q |
119 |
tacacaagaaagaaccacaaattatgagtctccaaaatatgctacgccaatatgattcttacttttactgtcatagttttgatgat |
204 |
Q |
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| T |
15715793 |
tacacaagaaagaaccacaaattatgagtctccaaaatatgctacgccaatacaattcttacttttactgtcatagttttgctgat |
15715708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 30776282 - 30776097
Alignment:
| Q |
19 |
gtacagggagtgatttatgcccaagccattttggaaaatgtattccaaaccctcctatttaagttcgatttcaaaattaaatcttgtataaagttggtct |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30776282 |
gtacagggagtgatttatgcccaagccattttggaaaatgtattccaaaccctcctatttaagttcgatttgaaaattaaatcttgtataaagttggtct |
30776183 |
T |
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| Q |
119 |
tacacaagaaagaaccacaaattatgagtctccaaaatatgctacgccaatatgattcttacttttactgtcatagttttgatgat |
204 |
Q |
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| T |
30776182 |
tacacaagaaagaaccacaaattatgagtctccaaaatatgctacgccaatacaattcttacttttactgtcatagttttgctgat |
30776097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 43862880 - 43862811
Alignment:
| Q |
20 |
tacagggagtgatttatgcccaagccattttggaaaatgtattccaaaccctcctatttaagttcgatttc |
90 |
Q |
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| T |
43862880 |
tacaggcagtgatttatgcctaagcctttttg-aaaatgtattccaaaccctcctaatcaagtttgatttc |
43862811 |
T |
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