View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5728_low_2 (Length: 484)
Name: NF5728_low_2
Description: NF5728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5728_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 470; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Original strand, 2685851 - 2686324
Alignment:
| Q |
1 |
tctgtatcatgttgcatctctggtacaccactaaacctttcaccattccatggtccacttcgatatattatgttatcatcattccgtaggaaaatctctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2685851 |
tctgtatcatgttgcatctctggtacaccactaaacctttcaccattccatggtccacttcgatatattatgttatcatcattccgtaggaaaatctctg |
2685950 |
T |
|
| Q |
101 |
gtaaaccatgataatcaattttgaatgaataatgacctgttgaaggatcttcaccagtgttcttccatgatgttaagtgtttttctgtgtttttgtcgaa |
200 |
Q |
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| T |
2685951 |
gtaaaccatgataatcaattttgaatgaataatgacctgttgaaggatcttcaccagtgttcttccatgatgttaagtgtttttctgtgtttttgtcgaa |
2686050 |
T |
|
| Q |
201 |
gttccaaccgatattcatggatggtaacaaagtatctgttggataatcaaagctttgccatagatattttgtcggatcattcacgtttgtttctcttaga |
300 |
Q |
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| T |
2686051 |
gttccaaccgatattcatggatggtaacaaagtatctgttggataatcaaagctttgccatagatattttgtcggatcattcacgtttgtttctcttaga |
2686150 |
T |
|
| Q |
301 |
actaaatttccattatcgaaaagctgaagaacaagtgggttggtagcttttgtttgattcgaagaccatatgaggttgttgtctgaatctgatgatgaat |
400 |
Q |
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| T |
2686151 |
actaaatttccattatcgaaaagctgaagaacaagtgggttggtagcttttgtttgattggaagaccatatgaggttgttgtctgaatctgatgatgaat |
2686250 |
T |
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| Q |
401 |
tgagaagtactatgtttccattgtcaccgattttgaggtgactattggttgaattttgaagagggttgtctctg |
474 |
Q |
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| T |
2686251 |
tgagaagtactatgtttccattgtcaccgattttgaggtgactattggttgaattttgaagagggttgtctctg |
2686324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 2669967 - 2669927
Alignment:
| Q |
222 |
tggtaacaaagtatctgttggataatcaaagctttgccata |
262 |
Q |
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| T |
2669967 |
tggtaacaaagtatctgttggatgatcaaaactctgccata |
2669927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 281
Target Start/End: Complemental strand, 36361212 - 36360942
Alignment:
| Q |
11 |
gttgcatctctggtacaccactaaacctttcaccattccatggtccacttcgatatattatgttatcatcattccgtaggaaaatctctggtaaaccatg |
110 |
Q |
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|||||||||||||||||||||| || |||| |||||||||||||||||||| ||| | | | ||| | |||| || ||||| ||||| | |||||| |
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| T |
36361212 |
gttgcatctctggtacaccactgaatcttttaccattccatggtccacttctataaactcttctatttttgttccaaagaaaaatttctggaacaccatg |
36361113 |
T |
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| Q |
111 |
ataatcaattttgaatgaataatgacctgttgaaggatcttcaccagtgttcttccatgatgttaagtgtttttctgtgtttttgtcgaagttccaaccg |
210 |
Q |
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| T |
36361112 |
ataatccatcttgaaagatatatcaccaattgaagggtcttgatctgtttgtttccatgaatttatgtgtgtttctgtgttcgtgtcgaagttccaacca |
36361013 |
T |
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| Q |
211 |
atattcatggatggtaacaaagtatctgttggataatcaaagctttgccatagatattttgtcggatcatt |
281 |
Q |
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| T |
36361012 |
agtttcataccaggtaacaaagtatctgtagggtaatcaaaactttgccatagaaaatttgttggatcatt |
36360942 |
T |
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