View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5728_low_4 (Length: 294)

Name: NF5728_low_4
Description: NF5728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5728_low_4
NF5728_low_4
[»] chr8 (11 HSPs)
chr8 (1-294)||(2018366-2018659)
chr8 (19-294)||(2014983-2015258)
chr8 (19-293)||(1963171-1963445)
chr8 (60-293)||(2011579-2011818)
chr8 (58-219)||(2004664-2004825)
chr8 (23-211)||(1968775-1968963)
chr8 (23-219)||(2008044-2008240)
chr8 (63-235)||(1964879-1965051)
chr8 (152-232)||(2436704-2436784)
chr8 (128-219)||(560656-560747)
chr8 (115-219)||(3700912-3701016)
[»] chr1 (2 HSPs)
chr1 (80-264)||(5902405-5902589)
chr1 (80-264)||(5905889-5906073)
[»] scaffold0078 (3 HSPs)
scaffold0078 (114-198)||(22055-22139)
scaffold0078 (118-234)||(57348-57464)
scaffold0078 (118-234)||(2805-2921)
[»] scaffold0184 (1 HSPs)
scaffold0184 (118-234)||(15380-15496)
[»] chr7 (2 HSPs)
chr7 (118-199)||(16566461-16566542)
chr7 (118-199)||(16599120-16599201)


Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 2018659 - 2018366
Alignment:
1 agtggcaaccctgatgtttatgctgttggaccaattatccaaacgccaaccaaatcgggtgatgatgataatgggttgaagtgtctggcatggttggaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2018659 agtggcaaccctgatgtttatgctgttggaccaattatccaaacgccaaccaaatcgggtgatgatgataatgggttgaagtgtctggcatggttggaca 2018560  T
101 aacagcaaacttgttcagttttgtatgtttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagtaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2018559 aacagcaaacttgttcagttttgtatgtttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagtaa 2018460  T
201 tcataaattcttatgggttgtaagatcaccaagtaatacagccaatgctgcatatctttcagcatctgatgttgaccctttacaatttttacct 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2018459 tcataaattcttatgggttgtaagatcaccaagtaatacagccaatgctgcatatctttcagcatctgatgttgaccctttacaatttttacct 2018366  T

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Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 2015258 - 2014983
Alignment:
19 tatgctgttggaccaattatccaaacgccaaccaaatcgggtgatgatgataatgggttgaagtgtctggcatggttggacaaacagcaaacttgttcag 118  Q
    |||||||||||||| ||||||||||| | ||| | ||| |||||||||| ||||  |||  | ||||||||||||||||||||||| |   |||||||||    
2015258 tatgctgttggacccattatccaaacactaacaacatctggtgatgatgctaataagtttgaatgtctggcatggttggacaaacaacggccttgttcag 2015159  T
119 ttttgtatgtttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagtaatcataaattcttatgggt 218  Q
    || ||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2015158 ttctgtatgtgtctttcgggagtggtggaacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagtaatcataaattcttatgggt 2015059  T
219 tgtaagatcaccaagtaatacagccaatgctgcatatctttcagcatctgatgttgaccctttacaatttttacct 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2015058 tgtaagatcaccaagtaatacagccaatgctgcatatctttcagcatctgatgttgaccctttacaatttttacct 2014983  T

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Target: chr8; HSP #3
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 1963171 - 1963445
Alignment:
19 tatgctgttggaccaattatccaaacgccaaccaaatcgggtgatgatgataatgggttgaagtgtctggcatggttggacaaacagcaaacttgttcag 118  Q
    |||||||||||||| ||||||||||| | ||| | ||| |||||||||| ||||  |||  |||||||| ||||||||||||||||     |||||||||    
1963171 tatgctgttggacccattatccaaacactaacaacatctggtgatgatgctaataagtttgagtgtctgacatggttggacaaacaatgtccttgttcag 1963270  T
119 ttttgtatgtttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagtaatcataaattcttatgggt 218  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
1963271 ttttgtatgtttcttttggtagtggtggcacactttcgcaagaacaaattgatgagttggctttgggtttggaattgagtaatcataaattcttatgggt 1963370  T
219 tgtaagatcaccaagtaatacagccaatgctgcatatctttcagcatctgatgttgaccctttacaatttttacc 293  Q
    ||||||| | ||||||| |||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||    
1963371 tgtaagagctccaagtagtacagcaaatgctgcatatctttcagcatctgatgttgatcctttacagtttttacc 1963445  T

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Target: chr8; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 60 - 293
Target Start/End: Complemental strand, 2011818 - 2011579
Alignment:
60 tgatgatgataatgggttgaagtgtctggcatggttggacaaacagcaaacttgttcagttttgtatgtttcttttgggagtggtggcacactttcgcaa 159  Q
    |||||||| |||||| ||| |||||||| ||||||| |||||||| ||| ||||||||||||||||||| ||||| || |||||||| |||||||| ||     
2011818 tgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggtagtggtggtacactttcacac 2011719  T
160 gaacaaattaatgagctggctttgggtttggaattgagtaatcataaattcttatgggttgtaagatcaccaagtaata---cagccaatgctgcatatc 256  Q
    |||||||||  ||||||||||||||||||||||||||||||||| |||||| ||||||||||  || ||||||||| ||   || | ||||| |||||||    
2011718 gaacaaattgttgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtgcgagcaccaagtagtagttcatctaatgcagcatatc 2011619  T
257 tttcagc---atctgatgttgaccctttacaatttttacc 293  Q
    |||||||   |  |||||||||  ||||||||||||||||    
2011618 tttcagcacaaaatgatgttgatgctttacaatttttacc 2011579  T

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Target: chr8; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 58 - 219
Target Start/End: Complemental strand, 2004825 - 2004664
Alignment:
58 ggtgatgatgataatgggttgaagtgtctggcatggttggacaaacagcaaacttgttcagttttgtatgtttcttttgggagtggtggcacactttcgc 157  Q
    ||||||| | || |||||||| | |||||  |||||||||| ||||||||| ||||||||||||||||||| |||||||||||||| || |||||||| |    
2004825 ggtgatgctaatcatgggttggaatgtctaacatggttggataaacagcaaccttgttcagttttgtatgtgtcttttgggagtggcggtacactttcac 2004726  T
158 aagaacaaattaatgagctggctttgggtttggaattgagtaatcataaattcttatgggtt 219  Q
    |||||||||||  ||||||||||||||||||||||||||||||| | | |||||| ||||||    
2004725 aagaacaaattgttgagctggctttgggtttggaattgagtaataagatattcttgtgggtt 2004664  T

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Target: chr8; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 211
Target Start/End: Original strand, 1968775 - 1968963
Alignment:
23 ctgttggaccaattatccaaacgccaaccaaatcgggtgatgatgataatgggttgaagtgtctggcatggttggacaaacagcaaacttgttcagtttt 122  Q
    ||||||||||||||||||||||   ||| |  || |||||||||| |||||| ||| |||||||||| |||||||| ||||||||  |||| ||||||||    
1968775 ctgttggaccaattatccaaacagaaacaagttcaggtgatgatgctaatggcttggagtgtctggcctggttggataaacagcagccttgctcagtttt 1968874  T
123 gtatgtttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagtaatcataaattct 211  Q
    |||||| ||||| ||||||||||| |||||||| || |||||||||   ||||||||||| |||||||||||||||||| | |||||||    
1968875 gtatgtatctttcgggagtggtggtacactttcacacgaacaaattgtggagctggctttaggtttggaattgagtaataaaaaattct 1968963  T

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Target: chr8; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 2008240 - 2008044
Alignment:
23 ctgttggaccaattatccaaacgccaaccaaatcgggtgatgatgataatgggttgaagtgtctggcatggttggacaaacagcaaacttgttcagtttt 122  Q
    |||||||||| |||||| ||||   ||| ||||| |||||||||| |||||| ||| |||||||||| |||||||| ||||||||| ||||||| |||||    
2008240 ctgttggacctattatcgaaacagaaacaaaatctggtgatgatgctaatggcttggagtgtctggcctggttggataaacagcaaccttgttcggtttt 2008141  T
123 gtatgtttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagtaatcataaattcttatgggtt 219  Q
    |||||| |||||||||||||| || |||||||| || || ||||||   ||||| ||||||||||||||||||||||||   |||||||| ||||||    
2008140 gtatgtatcttttgggagtggaggtacactttcacaggagcaaattgtggagctagctttgggtttggaattgagtaatacaaaattcttgtgggtt 2008044  T

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Target: chr8; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 63 - 235
Target Start/End: Original strand, 1964879 - 1965051
Alignment:
63 tgatgataatgggttgaagtgtctggcatggttggacaaacagcaaacttgttcagttttgtatgtttcttttgggagtggtggcacactttcgcaagaa 162  Q
    ||||| |||||| ||| |||||||| ||||||| |||||||| ||| ||||||||||||||||||| ||||| ||||||||||| |||||||| || |||    
1964879 tgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcgggagtggtggtacactttcacacgaa 1964978  T
163 caaattaatgagctggctttgggtttggaattgagtaatcataaattcttatgggttgtaagatcaccaagta 235  Q
    ||||||  | |||||||| |||| || |||||||||||||| |||||| ||||||||||  || |||||||||    
1964979 caaattgttcagctggctctggggttagaattgagtaatcagaaattcctatgggttgtgtgagcaccaagta 1965051  T

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Target: chr8; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 2436704 - 2436784
Alignment:
152 tttcgcaagaacaaattaatgagctggctttgggtttggaattgagtaatcataaattcttatgggttgtaagatcaccaa 232  Q
    |||| ||||||||||||  |||||||||||| ||| |||||| ||||||||| ||||||||||||||||||||| ||||||    
2436704 tttcacaagaacaaattgttgagctggctttcggtctggaatcgagtaatcagaaattcttatgggttgtaagagcaccaa 2436784  T

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Target: chr8; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 219
Target Start/End: Complemental strand, 560747 - 560656
Alignment:
128 tttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagtaatcataaattcttatgggtt 219  Q
    |||||||||| ||||| ||||||||||| ||||| |||||||||||||| || ||||| |||||| | || || |||||||| |||||||||    
560747 tttcttttggaagtgggggcacactttcacaagaccaaattaatgagcttgccttgggattggaacttagcaaccataaatttttatgggtt 560656  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 219
Target Start/End: Original strand, 3700912 - 3701016
Alignment:
115 tcagttttgtatgtttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagtaatcataaattcttat 214  Q
    |||||||||||||| |  ||||| ||||| || ||  | || ||| ||||||| ||||| || |||||||| ||||| ||||||||||| |||||||| |    
3700912 tcagttttgtatgtctgctttggaagtggaggaactttatctcaacaacaaatcaatgaactagctttggggttggagttgagtaatcagaaattcttgt 3701011  T
215 gggtt 219  Q
    |||||    
3701012 gggtt 3701016  T

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Target: chr1 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 80 - 264
Target Start/End: Original strand, 5902405 - 5902589
Alignment:
80 agtgtctggcatggttggacaaacagcaaacttgttcagttttgtatgtttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggc 179  Q
    |||||||| |||||||  | ||||| ||| |||||||||||||||||||||||||||| ||||||||  ||||||| |||||||||||| ||||| ||||    
5902405 agtgtctgacatggttacataaacaacaaccttgttcagttttgtatgtttcttttggaagtggtggtgcactttcacaagaacaaattgatgagttggc 5902504  T
180 tttgggtttggaattgagtaatcataaattcttatgggttgtaagatcaccaagtaatacagccaatgctgcatatctttcagca 264  Q
    | | |||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||| || ||||||||||||||||    
5902505 tattggtttggaattgagtaatcataaattcttatgggttgtaagagcaccaagtagttcagccagtggtgcatatctttcagca 5902589  T

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Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 80 - 264
Target Start/End: Original strand, 5905889 - 5906073
Alignment:
80 agtgtctggcatggttggacaaacagcaaacttgttcagttttgtatgtttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggc 179  Q
    ||||| || ||||||| || ||||||||  |||||||||||||||||||||||||||| || |||||  ||||||| |||||||||| | ||||||| ||    
5905889 agtgtttgacatggttagataaacagcagccttgttcagttttgtatgtttcttttggaagcggtggtgcactttcacaagaacaaactgatgagctagc 5905988  T
180 tttgggtttggaattgagtaatcataaattcttatgggttgtaagatcaccaagtaatacagccaatgctgcatatctttcagca 264  Q
    | | |||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||   || ||||||||||||||||    
5905989 tattggtttggaattgagtaatcataaattcttatgggttgtaagagcaccaagtagttcagcatgtggtgcatatctttcagca 5906073  T

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Target: scaffold0078 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 198
Target Start/End: Original strand, 22055 - 22139
Alignment:
114 ttcagttttgtatgtttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagt 198  Q
    |||||||||||||||||||||||| |||||||| |||||||| |||  |||||| |||||||| ||||| |||||||||||||||    
22055 ttcagttttgtatgtttcttttggaagtggtggaacactttctcaaacacaaatcaatgagctagcttttggtttggaattgagt 22139  T

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Target: scaffold0078; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 57348 - 57464
Alignment:
118 gttttgtatgtttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagtaatcataaattcttatggg 217  Q
    |||||||||||||||||||| |||||||| |||||||| |||  |||||| ||||| || ||||| |||||||||||||||  ||| | |||| | ||||    
57348 gttttgtatgtttcttttggaagtggtggaacactttctcaaacacaaataaatgaactagcttttggtttggaattgagtggtcaaagattcatttggg 57447  T
218 ttgtaagatcaccaagt 234  Q
    |||| ||| ||||||||    
57448 ttgtgagagcaccaagt 57464  T

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Target: scaffold0078; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 2805 - 2921
Alignment:
118 gttttgtatgtttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagtaatcataaattcttatggg 217  Q
    |||||||||||||||||||| |||||||| |||||||| |||  ||| || ||||| || ||||| |||||||||||||||  ||| | |||| | ||||    
2805 gttttgtatgtttcttttggaagtggtggaacactttcacaaagacagatgaatgaactagcttttggtttggaattgagtggtcaaagattcatttggg 2904  T
218 ttgtaagatcaccaagt 234  Q
    |||| ||| ||||||||    
2905 ttgtgagagcaccaagt 2921  T

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Target: scaffold0184 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 118 - 234
Target Start/End: Complemental strand, 15496 - 15380
Alignment:
118 gttttgtatgtttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagtaatcataaattcttatggg 217  Q
    |||||||||||||||||||| |||||||| |||||||| |||  |||||| ||||| || ||||| |||||||||||||||  ||| | |||| | ||||    
15496 gttttgtatgtttcttttggaagtggtggaacactttctcaaacacaaataaatgaactagcttttggtttggaattgagtggtcaaagattcatttggg 15397  T
218 ttgtaagatcaccaagt 234  Q
    |||| ||| ||||||||    
15396 ttgtgagagcaccaagt 15380  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 199
Target Start/End: Original strand, 16566461 - 16566542
Alignment:
118 gttttgtatgtttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagta 199  Q
    |||||||||||||||||||| |||| ||| |||||||| |||  ||| |||||||| || || || ||||||||||||||||    
16566461 gttttgtatgtttcttttggaagtgttggaacactttctcaaagacagattaatgaactagcctttggtttggaattgagta 16566542  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 199
Target Start/End: Complemental strand, 16599201 - 16599120
Alignment:
118 gttttgtatgtttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagta 199  Q
    |||||||||||||||||||| |||| ||| |||||||| |||  ||| |||||||| || || || ||||||||||||||||    
16599201 gttttgtatgtttcttttggaagtgttggaacactttctcaaagacagattaatgaactagcctttggtttggaattgagta 16599120  T

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