View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5728_low_5 (Length: 264)
Name: NF5728_low_5
Description: NF5728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5728_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 4167316 - 4167080
Alignment:
| Q |
20 |
aggacccttgtaggcattgcatacagatttcacgagatcaccaaactgtagaaaagaattaggaatattaataagggagagaaatataagtgcttaagtt |
119 |
Q |
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| T |
4167316 |
aggacccttgtaggcattgcatacagatttcacgagatcaccaaactgtagaaaagaattaggaatattaataagggagagaaatataagtgtttaagtt |
4167217 |
T |
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| Q |
120 |
atcaaagattaatatgttagttaag-----nnnnnnnngttactaacatcagcattcacatattggccattcacaaggagccaaggtgtgtgagtaagag |
214 |
Q |
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| T |
4167216 |
atcaaagattaatatgttagttaagaaaaaaaaaaaaagttactaacatcagcattcacatattggccattcacaaggagccaaggtgtgtgagtaagag |
4167117 |
T |
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| Q |
215 |
gtggatttagccaatttgtttctctaccattgtgtct |
251 |
Q |
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| T |
4167116 |
gtggatttagccaatttgtttctctaccattgtgtct |
4167080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 4174277 - 4174212
Alignment:
| Q |
46 |
atttcacgagatcaccaaactgtagaaaagaattaggaatattaataagggagagaaatataagtg |
111 |
Q |
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| T |
4174277 |
atttcactagatcatcaacctgtagaaaagaattaggaatgttaataagggagagaaatttaagtg |
4174212 |
T |
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