View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5729-Insertion-2 (Length: 772)
Name: NF5729-Insertion-2
Description: NF5729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5729-Insertion-2 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 571; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 9 - 772
Target Start/End: Complemental strand, 34795699 - 34794923
Alignment:
| Q |
9 |
ggtttgggatttaagaataacttgcttcatctgctatttacatctgggtgtgttttctacttcctcttcaaaccacgtcattgtgtgctttccaagcaag |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34795699 |
ggtttgggatttaagaataacttgcttcatctgctatttacatctgggtgtgttttctacttcctcttcaaaccacgtaattgtgtgctttccaagcaag |
34795600 |
T |
|
| Q |
109 |
gaattcaacttaagggtgcttgtgctttgggtcttgggctcacttcacttgccttctccaagaagcttcacctattcatttggccttgaagatccatgtc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34795599 |
gaattcaacttaagggtgcttgtgctttgggtcttgggctcacttcacttgccttctccaagaagcttcacctattcatttggccttgaagatccatgtc |
34795500 |
T |
|
| Q |
209 |
ttagcttatagtctcttagaaaaattgc-aagatctaatttagtccctcataaaagat-----------agaaagtgaaaataagatccacattttgtag |
296 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34795499 |
ttagcttatagtctcttagaaaaattgctaagatctaatttagcccctcataaaagatagaaagagaaaagaaagtgaaaataagatccacattttgtag |
34795400 |
T |
|
| Q |
297 |
tcttcctaccttctttattttttgtttggttgagggaggaaagatattaaagatagaaagagaaaagaaagtgagtcagaaaataagattattgtttact |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
34795399 |
tcttcctaccttctttattttttgtttggttgagggaggaaagatattaaagatagaaagagaaaagaaagtgagtgagaaaataagattattgtttagt |
34795300 |
T |
|
| Q |
397 |
agtttgatattagnnnnnnnnnnnnnntacaccagtgactcctaaggnnnnnnnaaatgacactgacatctcctctattttgtcacatgacacaaacctc |
496 |
Q |
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||||||||||||| |||| | ||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
34795299 |
agtttgatattagaaaaaaaggaaaaatacatcggtgactcctaaggtttctttaaatgacacagccatctcctctattttgtcacatgacacaaacctc |
34795200 |
T |
|
| Q |
497 |
tcatgttgttagaaaagttaagttgtcgtcaattaaagaatagaaacacacgcgtcttcttattcctttcactctggttataaactgcatgtacaccttt |
596 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||| || ||||| |
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| T |
34795199 |
ccatgttgttagaaaagttaagttgtcgtcaattaaagaatagaaacacacgcctcttcttattcccttcactctggttataaattgcatgcacgccttt |
34795100 |
T |
|
| Q |
597 |
tcagtttctcttctctgtaacgcgttctaa-nnnnnnncatcatccatgcttttcctccatagaagcattggacaacagctaaatcattgggtatagttg |
695 |
Q |
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|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34795099 |
tcagtttctcttctctctaacgcgttctaattttttttcatcatccatgcttttcctccatagaagcattggacaacagccaaatcattgggtatagttg |
34795000 |
T |
|
| Q |
696 |
cattcatactcatccttgttcgttgcattgggtatcgtttctttcatcatcccttctcatccttgcccgccttcgtt |
772 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34794999 |
cattcatactcatccttgttcgttgcattgggtatcgtttctttcatcatcccttctcatccttgctcgccttcgtt |
34794923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 635 - 739
Target Start/End: Original strand, 16911365 - 16911469
Alignment:
| Q |
635 |
atcatccatgcttttcctccatagaagcattggacaacagctaaatcattgggtatagttgcattcatactcatccttgttcgttgcattgggtatcgtt |
734 |
Q |
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||||||||||||||| ||| || |||||||||||||| ||||||||||||| ||||||||| | ||| ||||||||||| ||||||||||||||| || |
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| T |
16911365 |
atcatccatgctttttctctatcgaagcattggacaatggctaaatcattggatatagttgcttgaataatcatccttgtttgttgcattgggtatcatt |
16911464 |
T |
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| Q |
735 |
tcttt |
739 |
Q |
| |
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||||| |
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| T |
16911465 |
tcttt |
16911469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 611
Target Start/End: Original strand, 16911266 - 16911333
Alignment:
| Q |
544 |
acacgcgtcttcttattcctttcactctggttataaactgcatgtacaccttttcagtttctcttctc |
611 |
Q |
| |
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|||||| |||||| |||||||||||||| |||||||| ||||| |||| |||||| |||||||||| |
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| T |
16911266 |
acacgcctcttctcattcctttcactctagttataaagtgcatatacatattttcatcttctcttctc |
16911333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 634 - 744
Target Start/End: Complemental strand, 38303398 - 38303288
Alignment:
| Q |
634 |
catcatccatgcttttcctccatagaagcattggacaacagctaaatcattgggtatagttgcattcatactcatccttgttcgttgcattgggtatcgt |
733 |
Q |
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||||||| ||| | ||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| ||||| | |
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| T |
38303398 |
catcatcgatgttgttcctccatggaagcattggacaacagctaaatcattgggtataattgctttcatactcatccttgtctgttgcattatgtatcat |
38303299 |
T |
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| Q |
734 |
ttctttcatca |
744 |
Q |
| |
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| T |
38303298 |
ttctttcatca |
38303288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 636 - 742
Target Start/End: Original strand, 49677039 - 49677145
Alignment:
| Q |
636 |
tcatccatgcttttcctccatagaagcattggacaacagctaaatcattgggtatagttgcattcatactcatccttgttcgttgcattgggtatcgttt |
735 |
Q |
| |
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||||| || |||||| || || |||||||| ||||| || ||||||||| |||||| |||| |||||||| ||| ||||||||||||||||||||||||| |
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| T |
49677039 |
tcatcgattcttttcttctatggaagcattagacaatagttaaatcattaggtataattgctttcatacttatcattgttcgttgcattgggtatcgttt |
49677138 |
T |
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| Q |
736 |
ctttcat |
742 |
Q |
| |
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||||||| |
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| T |
49677139 |
ctttcat |
49677145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 545 - 608
Target Start/End: Original strand, 49676939 - 49677002
Alignment:
| Q |
545 |
cacgcgtcttcttattcctttcactctggttataaactgcatgtacaccttttcagtttctctt |
608 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||| ||||| |||| ||||||||||||||| |
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| T |
49676939 |
cacgcctcttctcattcctttcactctggttataaattgcatacacactttttcagtttctctt |
49677002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 451 - 521
Target Start/End: Original strand, 26154485 - 26154555
Alignment:
| Q |
451 |
aaatgacactgacatctcctctattttgtcacatgacacaaacctctcatgttgttagaaaagttaagttg |
521 |
Q |
| |
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||||||||| |||| | ||||||||||||||||| || |||||||| ||| |||||||| ||||||||| |
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| T |
26154485 |
aaatgacacagacaccccctctattttgtcacataacccaaacctccgctgtcgttagaaacgttaagttg |
26154555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 451 - 521
Target Start/End: Original strand, 26167783 - 26167853
Alignment:
| Q |
451 |
aaatgacactgacatctcctctattttgtcacatgacacaaacctctcatgttgttagaaaagttaagttg |
521 |
Q |
| |
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| T |
26167783 |
aaatgacacagacaccccctctattttgtcacataacccaaacctccgctgtcgttagaaacgttaagttg |
26167853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 634 - 761
Target Start/End: Complemental strand, 30332822 - 30332696
Alignment:
| Q |
634 |
catcatccatgcttttcctccatagaagcattggacaacagctaaatcattgggtatagttgcattcatactcatccttgttcgttgcattgggtatcgt |
733 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||| ||||||||||| ||||| | ||||||||| ||| |||| |||| ||||| |||||||| | ||| | |
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| T |
30332822 |
catcatcgatgcttttcctccatggaagcattgcacaacagctaattcattcgatatagttgctttcgtacttatccctgttcattgcattgtgcatcat |
30332723 |
T |
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| Q |
734 |
ttctttcatcatcccttctcatccttgc |
761 |
Q |
| |
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|||||||||||| | ||||||||||||| |
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| T |
30332722 |
ttctttcatcat-cattctcatccttgc |
30332696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 670 - 745
Target Start/End: Original strand, 12139979 - 12140053
Alignment:
| Q |
670 |
aacagctaaatcattgggtatagttgcattcatactcatccttgttcgttgcattgggtatcgtttctttcatcat |
745 |
Q |
| |
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|||| ||||| ||||| |||||||||| || |||||||||||||| |||||||| |||||||||| ||||||||| |
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| T |
12139979 |
aacaactaaagcattgtgtatagttgcttttgtactcatccttgtttgttgcatt-ggtatcgtttttttcatcat |
12140053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 551 - 609
Target Start/End: Complemental strand, 17364612 - 17364554
Alignment:
| Q |
551 |
tcttcttattcctttcactctggttataaactgcatgtacaccttttcagtttctcttc |
609 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| | || |||||| ||||||||| |
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| T |
17364612 |
tcttctcattcctttcactctggttataaactgcatacaaacattttcaatttctcttc |
17364554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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