View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5729-Insertion-3 (Length: 690)
Name: NF5729-Insertion-3
Description: NF5729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5729-Insertion-3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 622; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 7 - 690
Target Start/End: Complemental strand, 4340228 - 4339548
Alignment:
| Q |
7 |
agtgagaatgtgactgcatgtatcaacatatcaagatggcagagtgaacattcctgtcagcattatcattatgtttgactaaaagtgagttcttcatgga |
106 |
Q |
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| T |
4340228 |
agtgagaatgtgactgcatgtatcaacatatcaagatggcagagtgaacattcctgtcagcattatcattacgtttgactacaagtgagttcttcattga |
4340129 |
T |
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| Q |
107 |
tatnnnnnnnntattcagttgtaaaacttatgaagatcttacaggctcgcaaaatattaagccccggtgatcattggtgttaccgatcacggatcctgaa |
206 |
Q |
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| T |
4340128 |
tatgaaaaaaatattcagttgtaaaacttatgaagatcttacaggctcgcaaaatattaagccccggtgatcattggtgttatcgatcacggatcctgaa |
4340029 |
T |
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| Q |
207 |
aatagtggtttcttcaaattccgctacgctatagcactactattagacaacactggtcattataaaaacatggtcttctgcaattttagtttagtaattc |
306 |
Q |
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| T |
4340028 |
aatagtggtttcttcaaattccgctacgctatagcactactattagacaacactggtcattataaaaacatggtcttctgcaattttagtttagtaattc |
4339929 |
T |
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| Q |
307 |
ctgaatcttgatatagcaattactactcgacatggttgtttcagtcacagcagtagtgattcttgccccacaacctaatatagtctgaaatcttaacatc |
406 |
Q |
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| T |
4339928 |
ctgaatcttgatatagcaattactactcgacatggttgtttcagtcacagcagt---gattcttgccccacaacctaatatagtctgaaatcttaacatc |
4339832 |
T |
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| Q |
407 |
tattgtattctcaaaagaatgaaagaataagtctccagcaacattgaagttataaattaaagtgcagtagtagttaatagaatgcttacagaaaatgatc |
506 |
Q |
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| T |
4339831 |
tattgtattctcaaaagaatgaaagaataagtctccagcaacattgaagttataaattaaagtgcagtagtagttaatagaatgcttacagaaaatgatc |
4339732 |
T |
|
| Q |
507 |
ccaagagtctatcacgtgctaagacctcagcagtcttcacccatatctgtagagaaatatttaaacttggtagcaaaaataaacataatttagactaaga |
606 |
Q |
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| T |
4339731 |
ccaagagtctatcacgtgctaagacctcagcagtcttcacccatatctgtagagaaatatttaaacttagtagcaaaaataaacataatttagactaaga |
4339632 |
T |
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| Q |
607 |
cttgttctcatgacttaaatattccattagtaaaatacaattttattacaccttccaaaacaaaaggaagagaactcatccaga |
690 |
Q |
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| T |
4339631 |
cttgttctcatgacttaaatattccattagtaaaatacaattttattacaccttccaaaacaaaaggaagagaactcatgcaga |
4339548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 19778965 - 19778931
Alignment:
| Q |
207 |
aatagtggtttcttcaaattccgctacgctatagc |
241 |
Q |
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| T |
19778965 |
aatagtggtttctccaaattccgctacgctatagc |
19778931 |
T |
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