View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5729-Insertion-4 (Length: 667)
Name: NF5729-Insertion-4
Description: NF5729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5729-Insertion-4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 625; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 8 - 664
Target Start/End: Complemental strand, 7089027 - 7088371
Alignment:
| Q |
8 |
caagttgcaacaaaaggttcatatgaagcaagtacttccaagggctgctcctgctcctgctaactataaagtagcaactgtatcttatgaactcaatgtt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7089027 |
caagttgcaacaaaaggttcatatgaagcaagtacttccaagggctgctcctgctcctgctaactataaagtagcaactgtatcttatgaactcaatgtt |
7088928 |
T |
|
| Q |
108 |
cttcgtacgagagggccaaggcgaatgcggagtacaatgcacttaatccccatatcttcagtccaagaaggaggaactgctcctactcctatggaattta |
207 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7088927 |
cttcgtacgagaggtccaaggcgaatgcggagtacaatgcacttaatccccatatcttcagtccaagaaggaggaactgctcctactcctatggaattta |
7088828 |
T |
|
| Q |
208 |
ccaattgccacaatgagcatgaatctgcaaaagaaaagaagccagaagttgttgaatttggctcaacttgcactgattttgcaagagagccactgatttt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7088827 |
ccaattgccacaatgagcatgaatctgcaaaagaaaagaagccagaagttgttgaatttggctcaacttacactgattttgcaagagagccactgatttt |
7088728 |
T |
|
| Q |
308 |
gaaaaacaaagcaccaagatggcatgaacaacttcaatgttggtgtttgaatttcaagggacgggttacggtggcttcagtgaagaattttcagcttgta |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7088727 |
gaaaaacaaagcaccaagatggcatgaacaactgcaatgttggtgtttgaatttcaagggacgggttacggtggcttcggtgaagaattttcagcttgta |
7088628 |
T |
|
| Q |
408 |
gcagctgcagaacctagccaaaacgtttcggctgcagaacaagaaaaagttatactacaatttggaaaaattgggaaggacatattcaccatggattatc |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7088627 |
gcagctgcagaacctagccaaaacgtttcggctgcagaacaagaaaaagttatactacaatttggaaaaattgggaaggacatattcaccatggactatc |
7088528 |
T |
|
| Q |
508 |
gatatcctctctccgcttttcaagcctttgcaatctgtttgagcagctttgacacaaaaccagcttgtgtatgataactcctttgaaatcttctttgata |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7088527 |
gatatcctctctccgcttttcaagcctttgcaatctgtttgagcagctttgacacaaaaccagcttgtgaatgataactcctttgaaatcttctttgata |
7088428 |
T |
|
| Q |
608 |
tcaaaatgtacatatttccttaagaaaatggtgcacaaagtaactctcatttttcac |
664 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
7088427 |
tcaaaatgtacatatttccttaagaaaatggtgcacaaaataactgtcatttttcac |
7088371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 605 - 664
Target Start/End: Complemental strand, 7668185 - 7668126
Alignment:
| Q |
605 |
atatcaaaatgtacatatttccttaagaaaatggtgcacaaagtaactctcatttttcac |
664 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
7668185 |
atatcaaaatgtacgtatttccttaagaaaatggcgcacaaaataactctcatttttcac |
7668126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 7668369 - 7668293
Alignment:
| Q |
8 |
caagttgcaacaaaaggttcatat--gaagcaagtacttccaagggctgctcctgctcctgctaactataaagtagc |
82 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||| |||| |||| |||||||||| |||||| |||||||||||| |
|
|
| T |
7668369 |
caagttgcaacaaaaggtccatatatgaagcaagtatttcctagggttgctcctgctactgctagctataaagtagc |
7668293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 403
Target Start/End: Complemental strand, 39943079 - 39942985
Alignment:
| Q |
309 |
aaaaacaaagcaccaagatggcatgaacaacttcaatgttggtgtttgaatttcaagggacgggttacggtggcttcagtgaagaattttcagct |
403 |
Q |
| |
|
|||||||| || || || |||||||||||||| ||||| ||||||||||| ||||| ||||| || || || |||||||| || ||||| ||||| |
|
|
| T |
39943079 |
aaaaacaaggctcctaggtggcatgaacaactccaatgctggtgtttgaacttcaatggacgtgtgacagtcgcttcagttaaaaatttccagct |
39942985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 324 - 581
Target Start/End: Complemental strand, 7878207 - 7877950
Alignment:
| Q |
324 |
agatggcatgaacaacttcaatgttggtgtttgaatttcaagggacgggttacggtggcttcagtgaagaattttcagcttgtagcagctgcagaaccta |
423 |
Q |
| |
|
|||||||||||||| || ||||| ||||| | ||||||||||| || ||||| ||||||||||| ||||| ||||| ||||| || |||| || || |
|
|
| T |
7878207 |
agatggcatgaacagctgcaatgctggtgcctaaatttcaagggccgcgttacagtggcttcagttaagaactttcaacttgtggctgctgttgagccat |
7878108 |
T |
|
| Q |
424 |
gccaaaacgtttcggctgcagaacaagaaaaagttatactacaatttggaaaaattgggaaggacatattcaccatggattatcgatatcctctctccgc |
523 |
Q |
| |
|
|| || ||| | ||||||| ||||| || ||||| | || |||||||| ||||| || || ||||| || |||||||| || ||||| ||||| || |
|
|
| T |
7878107 |
ctcataatgttcctcctgcagagcaagagaaggttatcttgcagtttggaaagattggaaaagatatatttactatggattaccgttatccactctctgc |
7878008 |
T |
|
| Q |
524 |
ttttcaagcctttgcaatctgtttgagcagctttgacacaaaaccagcttgtgtatga |
581 |
Q |
| |
|
|| ||||||||||| || || |||||||||||||| ||||||||||| |||| |||| |
|
|
| T |
7878007 |
cttccaagcctttgcgatatgcttgagcagctttgatacaaaaccagcatgtgaatga |
7877950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 465 - 562
Target Start/End: Complemental strand, 1200914 - 1200817
Alignment:
| Q |
465 |
caatttggaaaaattgggaaggacatattcaccatggattatcgatatcctctctccgcttttcaagcctttgcaatctgtttgagcagctttgacac |
562 |
Q |
| |
|
||||| || ||| ||||||| || || || ||||||||||||||||||||| | || || || ||||| |||||||| ||||| |||||||||||||| |
|
|
| T |
1200914 |
caattcggcaaagttgggaaagatatgtttaccatggattatcgatatcctttatctgcattccaagcttttgcaatatgtttaagcagctttgacac |
1200817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University