View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5729-Insertion-5 (Length: 665)
Name: NF5729-Insertion-5
Description: NF5729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5729-Insertion-5 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 255 - 665
Target Start/End: Original strand, 21083739 - 21084143
Alignment:
| Q |
255 |
tagtggtttattcacattctactaattatttgacaaaattttgtaccaaattgagtattgcgggacaatagcaatttgtttaatttctatcaatacgatg |
354 |
Q |
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| T |
21083739 |
tagtggtatattcacattctactaattatttgacaaaattttgtactaaattgagtattgcgggagaatagcaatttgtttaatttctatcaatatgatg |
21083838 |
T |
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| Q |
355 |
gttctttagtgttactatagccactatttgataacaatgatattgaaaggttacattttgttatgatttcggatattgtttttatgcttcaggcacacag |
454 |
Q |
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| T |
21083839 |
gttctatagtgttaata------ctatttgataacaatgatattgaaaggttacatttttttataatttctgatattgtttttatgcttcaggcacacag |
21083932 |
T |
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| Q |
455 |
gaattgtggtttatggcaatgagtacttctttggtggtggcatacaacacttgcctgcgggatcaacaccatacggaactccactcaaagtggtagagtt |
554 |
Q |
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| T |
21083933 |
gaattgtggtttatggcaatgagtacttctttggtggtggcatacaacacttgcctgctggatcaacaccatacggaactccactcaaagtggtagagtt |
21084032 |
T |
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| Q |
555 |
aggagttactcatgttccaaagggcgtgtttgaaatgtatttgcaggaaatcaatccgcggtacttgcctgaaacctatagtttgcttactcacaactgc |
654 |
Q |
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| T |
21084033 |
aggagttactcatgttccaaaggacgtgtttgaaatgtatttgcaggaaatcaatccgcggtacttgcctgaaacctatagtttgcttactcacaactgc |
21084132 |
T |
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| Q |
655 |
aacaacttcag |
665 |
Q |
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| T |
21084133 |
aacaacttcag |
21084143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 89 - 255
Target Start/End: Original strand, 21083550 - 21083716
Alignment:
| Q |
89 |
attggcacgtgtcagacactgaacccacctttaatctgtagtgtcggtgctagatagcttttaattactataggttaatcgtaggtttgtttctttcgtc |
188 |
Q |
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| T |
21083550 |
attggcacgtgtcagacactgaacccacctttaatctgtagtgtcggtgctagatagcttttaattactataggttaatcataggtttgtttctttcgtc |
21083649 |
T |
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| Q |
189 |
tggtatcttgaaggtacatgccaaaatcttggttgtgctattttttgttggcatattgaacggtggt |
255 |
Q |
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| T |
21083650 |
tggtatcttgaaggtacatgccaaaatcttggttgtgctattttttgttggcatattgaacggtggt |
21083716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 21083483 - 21083526
Alignment:
| Q |
46 |
ttggcattggtagtaacttgaataatggaggaagttgaatgtaa |
89 |
Q |
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| T |
21083483 |
ttggcattgatagtaacttgaataatggaggaagttgaatgtaa |
21083526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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