View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5729-Insertion-6 (Length: 432)
Name: NF5729-Insertion-6
Description: NF5729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5729-Insertion-6 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 12 - 432
Target Start/End: Complemental strand, 4600697 - 4600276
Alignment:
| Q |
12 |
gtacaactagaatctttgatgtaagaaatatattataattgcagttcaagtagtaaactgaaatttatgagggtgatccacaatcatatattcttttgat |
111 |
Q |
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| T |
4600697 |
gtacaactagaatctttgatgtaagaaatatattataattgcagttcaagtagtaaactgaaatttatgaagatgatccacaatcatatatatttttgat |
4600598 |
T |
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| Q |
112 |
aatatcttctaatgaacggttggaatgctgtgca-gtattcttgtaagatatagttttgagattttttggtatgatacaaaatttccaagtttctttatg |
210 |
Q |
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| T |
4600597 |
aatatcttctaatgaacggttggaatgctgtgcaagtattcttgtaagatatagttttgagattttttggtatgatacaaaatttccaagtttctttatt |
4600498 |
T |
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| Q |
211 |
gtcaaaatcgcgccacgataatattttctgtttttgcttgttttcttgtttggacgtgaagaacttgaattctcgggaaaattgttccaccaatactcga |
310 |
Q |
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| T |
4600497 |
gtcaaaatcgtgccacaataatattttctgtttttgcttgttttcttgtttggacgtgaagaacttgaattctcgggaaaattgttccaccaatactcga |
4600398 |
T |
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| Q |
311 |
gaaagagagatttctccatcaacgaagaagagagcaatcacaagtctaaaatggctgaaaatcgtactttaaaagattgtgtcactcccaccgctacaaa |
410 |
Q |
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| T |
4600397 |
gaaagagagatttctccatcaacgaagaagagagtgatcacaagtctaaaatggctgaaaatcgtactttaaaagattgtgtcactcccaccgctacaaa |
4600298 |
T |
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| Q |
411 |
accacattaaagcattgcacga |
432 |
Q |
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| T |
4600297 |
accacattaaagcattgcacga |
4600276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 4615324 - 4615125
Alignment:
| Q |
20 |
agaatctttgatgtaagaaatatat--tataattgcagttcaagtagtaaactgaaatttatgagggtga---tccacaatcatatattcttttgataat |
114 |
Q |
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| T |
4615324 |
agaatctttgatatgagaaatatatattatacttgcaattcaagtaa-aaattgaaaattatgagggtgaatatccacaatcatatactgttt-gatgat |
4615227 |
T |
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| Q |
115 |
atcttctaatgaacggttggaatgctgtgca-gtattcttgtaagatatagttttgagattttttggtatgatacaaaatttccaagtttctttatggtc |
213 |
Q |
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| T |
4615226 |
atcttccactgaatggttggaatgccatgcatgtat--tttttagatatag-tttgagatttcttggtatgactcaaaatttccaagtttttttagtgtc |
4615130 |
T |
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