View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5729_high_1 (Length: 533)
Name: NF5729_high_1
Description: NF5729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5729_high_1 |
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| [»] scaffold0065 (1 HSPs) |
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| [»] scaffold0774 (1 HSPs) |
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Alignment Details
Target: scaffold0065 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 168 - 517
Target Start/End: Original strand, 60478 - 60833
Alignment:
| Q |
168 |
gcaatttgttcaattattctcagaatgctacaaggtggatttcttggcacccttctaagaataattgttttgtccttaatgtggatgggagctgccttgg |
267 |
Q |
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| T |
60478 |
gcaatttgttcaattattctcagaatgctacaaggtagatttcttggcacccttctaagaataattgttttgtccttaatgtggatgggagctgacttgg |
60577 |
T |
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| Q |
268 |
tgattcgagccatgctaaagcaggaggcctaattagaagatgtgatggtagttgagtgattggattcagttgcttcctcggaatagccaatagcgcctat |
367 |
Q |
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| T |
60578 |
tgattcgggccgtgctggagcaggaggcctaattagaagaggtgatggtagttgggtgattggattcagttgcttcctcggaatagccaatagcacctat |
60677 |
T |
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| Q |
368 |
gcagaactcatggatgtttatcatggcttaaatcttgctatgaacaatggttgcacctatatctgttgttattc------caaagctgttatagatctca |
461 |
Q |
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| T |
60678 |
gcagaactcatggatgtttatcatggcttgaatctcgctaaaaacaatggttgcacctatatctgttgttattcagatttcaaagctgttatagatctca |
60777 |
T |
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| Q |
462 |
tttctaagcctatcgataagtttcattcttatacttcagtgatagccaacattaaa |
517 |
Q |
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| T |
60778 |
tttctaagcctatcgataagtttcattcttatacttcagtgatagccaacattaaa |
60833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0774 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0774
Description:
Target: scaffold0774; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 176 - 505
Target Start/End: Complemental strand, 935 - 600
Alignment:
| Q |
176 |
ttcaattattctcagaatgctacaaggtggatttcttggcacccttctaagaataattgttttgtccttaatgtggatgggagctgccttggtgattcga |
275 |
Q |
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| T |
935 |
ttcaattattctcagaatgctacaaggtccatttcttggcacccttctaaagagaattgttttgtcctgaatgtggatgggagctgccttggtgattcgg |
836 |
T |
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| Q |
276 |
gccatgctaaagcaggaggcctaattagaagatgtgatggtagttgagtgattggattcagttgcttcctcggaatagccaatagcgcctatgcagaact |
375 |
Q |
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| T |
835 |
gccgtgctggagcgggaggcctaattagaagaggtgatggtagttgggtgattggattcagttgcttcctcggaatagccaatagcacctatgcagaact |
736 |
T |
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| Q |
376 |
catggatgtttatcatggcttaaatcttgctatgaacaatggttgcacctatatctgttgtt------attccaaagctgttatagatctcatttctaag |
469 |
Q |
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| T |
735 |
catggctgtttatcatggcttgaatctcactaaaaacaatggttgcacctatatctgttgttattcagattccaaaactgttatagatctcatttctaag |
636 |
T |
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| Q |
470 |
cctatcgataagtttcattcttatacttcagtgata |
505 |
Q |
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| T |
635 |
cctatcgataagtttcattcttatgcttcagtgata |
600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 9221435 - 9221391
Alignment:
| Q |
82 |
gcgttgaagagtagatctctgagaagaaagaagccctaatttgtt |
126 |
Q |
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| T |
9221435 |
gcgttgaagagtggatctctgagaagaaagaagccccaatttgtt |
9221391 |
T |
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