View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5729_high_11 (Length: 271)
Name: NF5729_high_11
Description: NF5729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5729_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 7089259 - 7089021
Alignment:
| Q |
18 |
gcacagaatttttaatatcattggttactgatgatttctctagagctaacaatacttacattggaaagttaaggttagtgtcctcaatcaatccacattt |
117 |
Q |
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| T |
7089259 |
gcacagaatttttaatatcattggtttctgatgatttctctagagctaacaatacttacattggaaagttaaggttagtctcctcaatcaatccacattt |
7089160 |
T |
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| Q |
118 |
tttcatggttaatgcattattattctactgtttacttgatcattaagcaatgaacaggtctaattttctcggcaccaagttcacaatcttagatggtcat |
217 |
Q |
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| T |
7089159 |
tttcatggttaatgcattattattctactgtttacttgatcattaagcaatgaacaggtctaattttctcggcaccaagttcacaatcttagatggtcat |
7089060 |
T |
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| Q |
218 |
cctccacatgtgtctttgcttccatcgagttgcaagttg |
256 |
Q |
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| T |
7089059 |
cctccacatgtgtcttcgcttccatcgagttgcaagttg |
7089021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 26 - 256
Target Start/End: Complemental strand, 7668593 - 7668363
Alignment:
| Q |
26 |
tttttaatatcattggttactgatgatttctctagagctaacaatacttacattggaaagttaaggttagtgtcctcaatcaatccacattttttcatgg |
125 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||| | || |
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| T |
7668593 |
tttttaatatcattggtttctgatgatttctctagagctaacaatacttacattggaaagttaaggttagtgtcccatatcaattcacatcttttaa-gg |
7668495 |
T |
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| Q |
126 |
ttaatgcattattattctactgtttacttgatcattaagcaatg-aacaggtctaattttctcggcaccaagttcacaatcttagatggtcatcctccac |
224 |
Q |
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|||||||||||||||||| || ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
7668494 |
ctaatgcattattattctagtgcttagttgatcattaagcaaaataacaggtctaattttctcggcaccaagttcacgatcttggatggtcatcctccac |
7668395 |
T |
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| Q |
225 |
atgtgtctttgcttccatcgagttgcaagttg |
256 |
Q |
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| T |
7668394 |
atgtttcttcgcttccatcgagttgcaagttg |
7668363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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