View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5729_high_16 (Length: 240)
Name: NF5729_high_16
Description: NF5729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5729_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 6652238 - 6652457
Alignment:
| Q |
1 |
cttcagctattcaaatcttttgcataaatttacaagctgttgataacattcaatgtatttgttaggcacttcttaacacctttcttaatttggccgcagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6652238 |
cttcagctattcaaatcttttgcataaatttacaagctgttgataacattcaatgtatttgttaggcacttcttaacacctttcttaatttggctgcagt |
6652337 |
T |
|
| Q |
101 |
tcttacctgccggattctaatggatagacaaaaagaagagagaagtaaagcatactcactagtaacaaaatataagaaaactcaatccaaaaagtcaagt |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6652338 |
tcttacctgccggatactaatggatagacaaaaagaagagagaagtaaagcatactcactcgtaacaaaatataagaaaactcaatccaaaaagtcaagt |
6652437 |
T |
|
| Q |
201 |
attttttgtctaaattttgg |
220 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
6652438 |
attttttgtctaaattttgg |
6652457 |
T |
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