View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5729_high_17 (Length: 240)
Name: NF5729_high_17
Description: NF5729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5729_high_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 8101770 - 8101980
Alignment:
| Q |
13 |
aaaatctgatatcaaacggccatcagagaatcgacctgttggaaagttgaagtaagtttctccatagggcaagaaatttgcttggtcaaaggttgtagtg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8101770 |
aaaatctgatatcaaacggccatcagagaatcgacctgttgggaagttgaagtaagtttctccatagggcaagaaatttgcttggtcaaaggttgtagtg |
8101869 |
T |
|
| Q |
113 |
tttatgtaattgttattgccagcatctaagaatgaatccccaaaaatgaacaaggctttgttgcttctataataatctgttttgcttccaaaggtttgag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8101870 |
tttatgtaattgttattgccagcatctaagaatgaatccccaaaaatgaacaaggctttgttgcttctataataatctgttttgcttccaaaggtttgag |
8101969 |
T |
|
| Q |
213 |
atataagagct |
223 |
Q |
| |
|
|||||| |||| |
|
|
| T |
8101970 |
atataatagct |
8101980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University