View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5729_high_3 (Length: 455)
Name: NF5729_high_3
Description: NF5729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5729_high_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 19 - 455
Target Start/End: Complemental strand, 40107551 - 40107115
Alignment:
| Q |
19 |
gctacacccttcactcccaatctccctccaacgatgattgcaaaacggcattgcttgatttcttaaacgcgggtgtttctcttgctgacacgtggaaggt |
118 |
Q |
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| T |
40107551 |
gctacacccttcactcccaatctccctccaacgatgattgcaaaacggcattgcttgatttcttaaacgcggatgtttctcttgctgacacgtggaaggt |
40107452 |
T |
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| Q |
119 |
gttttcggattccgatgaaagatttgcggaactagcacaacatttgagtggtgctagggttttgagacaagatccctttgaatgcttgattcagtttatg |
218 |
Q |
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| T |
40107451 |
gttttcggattccgatgaaagatttgcggaactagcacaacatttgagtggtgctagggttttgagacaagatccctttgaatgcttgattcagtttatg |
40107352 |
T |
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| Q |
219 |
tgttcttctaataatcatattagtagaattactaaaatggttgattatgtttcgtctctcggaacttacttgggttgcgtcgaaggcttcaatttccacg |
318 |
Q |
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| T |
40107351 |
tgttcttctaataatcatattagtagaattactaaaatggttgattatgtttcgtctctcggaacttacttgggttgcgtcgaaggcttcgatttccacg |
40107252 |
T |
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| Q |
319 |
cttttcctactctgaaccagctttcattagtttctgaacagcaactaagagacgctggttttggttacaggttagtttaggtttagttccttcaataact |
418 |
Q |
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| T |
40107251 |
cttttcctactctgaaccagctttcattagtttctgaacagcaactaagagacgctggttttggttacaggttagtttaggtttagttccttcaataact |
40107152 |
T |
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| Q |
419 |
gttattagtttcgtgtgaatgttaacgtggttactat |
455 |
Q |
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| T |
40107151 |
gttattagtttcgtgtgaatgttaacgtggttactat |
40107115 |
T |
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