View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5729_high_6 (Length: 374)

Name: NF5729_high_6
Description: NF5729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5729_high_6
NF5729_high_6
[»] chr3 (14 HSPs)
chr3 (1-293)||(5455411-5455705)
chr3 (4-293)||(5446852-5447143)
chr3 (13-288)||(5503413-5503690)
chr3 (13-293)||(5485179-5485461)
chr3 (13-293)||(5490600-5490882)
chr3 (67-293)||(5853575-5853803)
chr3 (13-293)||(5526253-5526535)
chr3 (57-288)||(5827550-5827783)
chr3 (170-293)||(5801871-5801994)
chr3 (305-357)||(5456409-5456461)
chr3 (317-357)||(5447871-5447911)
chr3 (13-217)||(5848350-5848556)
chr3 (195-288)||(20344215-20344308)
chr3 (22-159)||(5802013-5802150)
[»] chr6 (1 HSPs)
chr6 (4-293)||(25808669-25808960)


Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 5455411 - 5455705
Alignment:
Q  1 ttcgctaaagcttcccaattctgtgtcctatctgtccattgtaaacgttgtgataatccatttgggtctagcaccactctagtaataattgaactgttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5455411 ttcgctaaagcttcccaattctgtgtcctatctgtccattgtaaacgttgtgataatccatttgggtctagtaccactctagtaataattgaactgttca 5455510  T
Q  101 aggtttcatattcgtaagagatttctttgtcagtgaacattactgagaaattcaagactc--tgcattctttgccaagaaacaccagtgaaaagaaatcc 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  5455511 aggtttcatattcgtaagagatttctttgtcagtgaacattactgagaaattcaagactctatgcattctttgccaagaaacaccagtgaaaagaaatcc 5455610  T
Q  199 attccatgaccctgctctatacagaattattgccccctttgcagtaagcagttggggaaaaccatgtgtatctatcttatatgaacactctcctt 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5455611 attccatgaccctgctctatacagaattattgccccctttgcagtaagcagttggggaaaaccatgtgtatctatcttatatgaacactcacctt 5455705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 4 - 293
Target Start/End: Original strand, 5446852 - 5447143
Alignment:
Q  4 gctaaagcttcccaattctgtgtcctatctgtccattgtaaacgttgtgataatccatttgggtctagcaccactctagtaataattgaactgttcaagg 103  Q
    ||||||||  |||||| ||||||| |||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||| |||| |    
T  5446852 gctaaagccgcccaatcctgtgtcttatctgtccattgtaagcgttgtgatattccatttgggtctagcacgactctagtaataattgaactgctcaaag 5446951  T
Q  104 tttcatattcgtaagagatttctttgtcagtgaacattactgagaaattcaagactc--tgcattctttgccaagaaacaccagtgaaaagaaatccatt 201  Q
    ||||||||| |||||||||||||||||||||||| ||||| |||||||||| |||||  |||| ||||||||||||||||||||||||||||||||||||    
T  5446952 tttcatattggtaagagatttctttgtcagtgaatattacagagaaattcatgactctatgcactctttgccaagaaacaccagtgaaaagaaatccatt 5447051  T
Q  202 ccatgaccctgctctatacagaattattgccccctttgcagtaagcagttggggaaaaccatgtgtatctatcttatatgaacactctcctt 293  Q
    ||||||||||||||||||||||| ||||||||| |||||||||| |||||| |||||||||||||||||||||||||| |||||||| ||||    
T  5447052 ccatgaccctgctctatacagaaatattgccccgtttgcagtaaccagttgaggaaaaccatgtgtatctatcttatacgaacactcacctt 5447143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 13 - 288
Target Start/End: Original strand, 5503413 - 5503690
Alignment:
Q  13 tcccaattctgtgtcctatctgtccattgtaaacgttgtgataatccatttgggtctagcaccactctagtaataattgaactgttcaaggtttcatatt 112  Q
    |||||| ||||||||||||||| |||||| |||||||||||   ||||| ||| |||||||||| ||||||| ||||||||||||| || ||||||||||    
T  5503413 tcccaaatctgtgtcctatctgaccattgaaaacgttgtgaagttccatatggatctagcaccaatctagtattaattgaactgtttaaagtttcatatt 5503512  T
Q  113 cgtaagagatttctttgtcagtgaacattactgagaaattcaagactct--gcattctttgccaagaaacaccagtgaaaagaaatccattccatgaccc 210  Q
      ||||||| ||||||||| ||||  | |||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5503513 gataagagaattctttgtcggtgactactactgagaaattcaagactctacgcagtctttgccaagaaacaccagtgaaaagaaatccattccatgaccc 5503612  T
Q  211 tgctctatacagaattattgccccctttgcagtaagcagttggggaaaaccatgtgtatctatcttatatgaacactc 288  Q
    | ||||||||||||   |||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  5503613 tcctctatacagaacctttgctccctttgcagtaaccagttgaggaaaaccatgtgtatctatcttatatgaacactc 5503690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 13 - 293
Target Start/End: Original strand, 5485179 - 5485461
Alignment:
Q  13 tcccaattctgtgtcctatctgtccattgtaaacgttgtgataatccatttgggtctagcaccactctagtaataattgaactgttcaaggtttcatatt 112  Q
    |||||| | ||||||||||||| |||||| ||||||||||| | ||||| ||| |||||||||| ||||||| |||||||||||||||| ||||||||||    
T  5485179 tcccaaatttgtgtcctatctgaccattgaaaacgttgtgacattccatatggatctagcaccaatctagtattaattgaactgttcaaagtttcatatt 5485278  T
Q  113 cgtaagagatttctttgtcagtgaacattactgagaaattcaagactct--gcattctttgccaagaaacaccagtgaaaagaaatccattccatgaccc 210  Q
      ||||||| ||||||||| ||||  | |||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5485279 gataagagaattctttgtcggtgactactactgagaaattcaagactctacgcagtctttgccaagaaacaccagtgaaaagaaatccattccatgaccc 5485378  T
Q  211 tgctctatacagaattattgccccctttgcagtaagcagttggggaaaaccatgtgtatctatcttatatgaacactctcctt 293  Q
    | ||||||| |||| | |||| ||||||| | ||| |||||| |||||||||||| |||||||||||||||||||||| ||||    
T  5485379 tcctctatatagaacttttgctccctttgaattaaccagttgaggaaaaccatgtatatctatcttatatgaacactcacctt 5485461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 13 - 293
Target Start/End: Original strand, 5490600 - 5490882
Alignment:
Q  13 tcccaattctgtgtcctatctgtccattgtaaacgttgtgataatccatttgggtctagcaccactctagtaataattgaactgttcaaggtttcatatt 112  Q
    |||||| ||||||||||||||| ||||||||||||||||||   ||||| ||| |||||||||| ||||||| ||||||||||||| || ||||||||||    
T  5490600 tcccaaatctgtgtcctatctgaccattgtaaacgttgtgaagttccatatggatctagcaccaatctagtattaattgaactgtttaaagtttcatatt 5490699  T
Q  113 cgtaagagatttctttgtcagtgaacattactgagaaattcaagactc--tgcattctttgccaagaaacaccagtgaaaagaaatccattccatgaccc 210  Q
      ||||||| |||||||||||||| || ||| ||||||||||||||||  |||| |||| ||||||||||||| ||||||||||||||||||||||||||    
T  5490700 gataagagaattctttgtcagtgaccactaccgagaaattcaagactctatgcagtcttagccaagaaacaccggtgaaaagaaatccattccatgaccc 5490799  T
Q  211 tgctctatacagaattattgccccctttgcagtaagcagttggggaaaaccatgtgtatctatcttatatgaacactctcctt 293  Q
    | ||||||||||||   |||| |||||||||||||  ||||| |||||||||||||||||||||||||| |||||||| ||||    
T  5490800 tcctctatacagaacgtttgctccctttgcagtaactagttgaggaaaaccatgtgtatctatcttatacgaacactcacctt 5490882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 67 - 293
Target Start/End: Complemental strand, 5853803 - 5853575
Alignment:
Q  67 tctagcaccactctagtaataattgaactgttcaaggtttcatattcgtaagagatttctttgtcagtgaacattactgagaaattcaagactctg--ca 164  Q
    |||||| ||| ||||||||||||||||| |||||  ||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||  ||    
T  5853803 tctagctccattctagtaataattgaacggttcatagtttcatattgataagagaattctttgtcagtgaacattactgagaaattcaagactctgtgca 5853704  T
Q  165 ttctttgccaagaaacaccagtgaaaagaaatccattccatgaccctgctctatacagaattattgccccctttgcagtaagcagttggggaaaaccatg 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || | || | |||||| |||||| |||||| |||||||||||    
T  5853703 ttctttgccaagaaacaccagtgaaaagaaatccattccatgaccctcctctatacaaaaatctttctcccttttcagtaaccagttgaggaaaaccatg 5853604  T
Q  265 tgtatctatcttatatgaacactctcctt 293  Q
      |||||||| ||||||||||||| ||||    
T  5853603 catatctatcctatatgaacactcacctt 5853575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 13 - 293
Target Start/End: Original strand, 5526253 - 5526535
Alignment:
Q  13 tcccaattctgtgtcctatctgtccattgtaaacgttgtgataatccatttgggtctagcaccactctagtaataattgaactgttcaaggtttcatatt 112  Q
    |||||| | ||||||||||||| |||||| | ||||||||| | ||| ||||  |||||||||| ||||||| |||||||||||||||| ||||||||||    
T  5526253 tcccaagtttgtgtcctatctgaccattgaagacgttgtgaaattccgtttgaatctagcaccagtctagtattaattgaactgttcaaagtttcatatt 5526352  T
Q  113 cgtaagagatttctttgtcagtgaacattactgagaaattcaagactct--gcattctttgccaagaaacaccagtgaaaagaaatccattccatgaccc 210  Q
      ||||||| |||||||||| |||| | |||||||||||||||||||||   ||  |||||||| | |  |||| |||||||||||||||||||||  ||    
T  5526353 gataagagacttctttgtcactgaaaactactgagaaattcaagactctagacaaactttgccagggagaaccactgaaaagaaatccattccatggtcc 5526452  T
Q  211 tgctctatacagaattattgccccctttgcagtaagcagttggggaaaaccatgtgtatctatcttatatgaacactctcctt 293  Q
    | |||||||||||||| |||| |||||| | |||| |||||| ||||||||||   |||| ||| |||||||| |||| ||||    
T  5526453 tcctctatacagaattcttgctccctttactgtaaccagttgaggaaaaccatccatatcgatcctatatgaatactcacctt 5526535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 57 - 288
Target Start/End: Complemental strand, 5827783 - 5827550
Alignment:
Q  57 tccatttgggtctagcaccactctagtaataattgaactgttcaaggtttcatattcgtaagagatttctttgtcagtgaacattactgagaaattcaag 156  Q
    ||||| ||| |||||||| | ||||||||| ||||||||||| || ||| ||||||  ||||  | |||||| ||||| ||||| | |||| ||||||||    
T  5827783 tccatatggatctagcacaaatctagtaatcattgaactgttaaacgttgcatattgataagtaacttctttatcagttaacatgaatgagtaattcaag 5827684  T
Q  157 actct--gcattctttgccaagaaacaccagtgaaaagaaatccattccatgaccctgctctatacagaattattgccccctttgcagtaagcagttggg 254  Q
    |||||  | | | ||||||||||||| ||| ||||| || ||||||||||||||||  |||||||||||||| ||   ||||||||| ||| | |||| |    
T  5827683 actctatgaactatttgccaagaaactccattgaaatgatatccattccatgacccacctctatacagaattgtttttccctttgcaataacctgttgag 5827584  T
Q  255 gaaaaccatgtgtatctatcttatatgaacactc 288  Q
    |||||||||| ||||||||| |||| ||| ||||    
T  5827583 gaaaaccatgagtatctatcctatacgaaaactc 5827550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 170 - 293
Target Start/End: Complemental strand, 5801994 - 5801871
Alignment:
Q  170 tgccaagaaacaccagtgaaaagaaatccattccatgaccctgctctatacagaattattgccccctttgcagtaagcagttggggaaaaccatgtgtat 269  Q
    ||||| ||||||| | |||||||||||||||||||||||||| |||||||||||| | |||| |||||||||||||  ||||| ||||||||| |  |||    
T  5801994 tgccaggaaacactactgaaaagaaatccattccatgaccctcctctatacagaactgttgctccctttgcagtaacaagttgaggaaaaccaggcatat 5801895  T
Q  270 ctatcttatatgaacactctcctt 293  Q
    ||||| ||||||||||||| ||||    
T  5801894 ctatcctatatgaacactcacctt 5801871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 5456409 - 5456461
Alignment:
Q  305 tgttgacaaaatgttgactgattcgttttcaagtcaagaccttctagtgttac 357  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5456409 tgttgacacaatgttgactgattcgttttcaagtcaagaccttctagtgttac 5456461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 5447871 - 5447911
Alignment:
Q  317 gttgactgattcgttttcaagtcaagaccttctagtgttac 357  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5447871 gttgactgattcgttttcaagtcaagaccttctagtgttac 5447911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 5848556 - 5848350
Alignment:
Q  13 tcccaattctgtgtcctatctgtccattgtaaacgttgtgataatccatttgggtctagcaccactctagtaataattgaactgttcaaggtttcatatt 112  Q
    |||||||| ||||||  ||| | |||||| | |||||||||   ||||| ||| | |||||| ||||||||||||||| ||||||| || ||||||||||    
T  5848556 tcccaattttgtgtctgatccgaccattgaagacgttgtgaagttccatatggatttagcacaactctagtaataattaaactgtttaaagtttcatatt 5848457  T
Q  113 cgtaagagatttctttgtcagtgaacattactgagaaattca--agactctgcattctttgccaagaaacaccagtgaaaagaaatccattccatgaccc 210  Q
       ||| || |||||||||||| ||||  | |||| ||||||  | | | |   |||||||||||| | | |||||||||||| |||||||||| |||||    
T  5848456 gaaaagtgacttctttgtcagttaacacaaatgagtaattcaatatattataatttctttgccaagtagctccagtgaaaagatatccattccacgaccc 5848357  T
Q  211 tgctcta 217  Q
    | |||||    
T  5848356 tcctcta 5848350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 288
Target Start/End: Original strand, 20344215 - 20344308
Alignment:
Q  195 atccattccatgaccctgctctatacagaattattgccccctttgcagtaagcagttggggaaaaccatgtgtatctatcttatatgaacactc 288  Q
    ||||||||||||||||| ||||||||| |||| |||  ||||||||| |||   |||| ||||||||||| ||||| ||| |||| ||| ||||    
T  20344215 atccattccatgaccctcctctatacataattgttgttccctttgcaataacttgttgaggaaaaccatgagtatcgatcctatacgaaaactc 20344308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 5802150 - 5802013
Alignment:
Q  22 tgtgtcctatctgtccattgtaaacgttgtgataatccatttgggtctagcaccactctagtaataattgaactgttcaaggtttcatattcgtaagaga 121  Q
    ||||| ||||||| |||| | |||||||||||   ||| | ||| ||||| | || ||| | |||||||||  |||||| |||||  ||||| |||||||    
T  5802150 tgtgtgctatctgaccatagaaaacgttgtgaatttccgtatggatctagtatcattcttgcaataattgacttgttcacggtttggtattcataagaga 5802051  T
Q  122 tttctttgtcagtgaacattactgagaaattcaagact 159  Q
     |||||||||| |||| | ||||| |||||||| ||||    
T  5802050 attctttgtcattgaagactactgtgaaattcatgact 5802013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 4 - 293
Target Start/End: Complemental strand, 25808960 - 25808669
Alignment:
Q  4 gctaaagcttcccaattctgtgtcctatctgtccattgtaaacgttgtgataatccatttgggtctagcaccactctagtaataattgaactgttcaagg 103  Q
    ||||||||  |||||| ||||||| |||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||| |||| |    
T  25808960 gctaaagccgcccaatcctgtgtcttatctgtccattgtaagcgttgtgatattccatttgggtctagcacgactctagtaataattgaactgctcaaag 25808861  T
Q  104 tttcatattcgtaagagatttctttgtcagtgaacattactgagaaattcaagactc--tgcattctttgccaagaaacaccagtgaaaagaaatccatt 201  Q
    ||||||||| |||||||||||||||||||||||| ||||| |||||||||| |||||  |||| ||||||||||||||||||||||||||||||||||||    
T  25808860 tttcatattggtaagagatttctttgtcagtgaatattacagagaaattcatgactctatgcactctttgccaagaaacaccagtgaaaagaaatccatt 25808761  T
Q  202 ccatgaccctgctctatacagaattattgccccctttgcagtaagcagttggggaaaaccatgtgtatctatcttatatgaacactctcctt 293  Q
    ||||||||||||||||||||||| ||||||||| |||||||||| |||||| |||||||||||||||||||||||||| |||||||| ||||    
T  25808760 ccatgaccctgctctatacagaaatattgccccgtttgcagtaaccagttgaggaaaaccatgtgtatctatcttatacgaacactcacctt 25808669  T

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