View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5729_high_9 (Length: 279)
Name: NF5729_high_9
Description: NF5729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5729_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 277
Target Start/End: Original strand, 4600696 - 4600956
Alignment:
| Q |
17 |
acagaagaaaacatgtgcaaattgatgaagcaacaatgaccactcattctatttatcatagtattgtctattatttacccatctctgaatctggcaaatt |
116 |
Q |
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| T |
4600696 |
acagaagaaaacatgtgcaaattgatgaagcaacaatgaccactcattctttttatcatagtattgtctattatttacccatctctgaatctggcaaatt |
4600795 |
T |
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| Q |
117 |
ttggacttatgataaagaacagaaaaatttgtctttcaacaaggactagagattctccctaaagtcacaattgtataaaatccaaatttaccaatcaaga |
216 |
Q |
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| T |
4600796 |
ttggacttatgataaagaacagaaaaatttgtctttcaacaaggactggagattctccctaaagtcacaattgtataaaatccaaatttaccaatcaaga |
4600895 |
T |
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| Q |
217 |
gggatggatgtgtccctcttatcaagatagccctccattctcttcacttgtatatgctttc |
277 |
Q |
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| T |
4600896 |
gggatggatgtgtccctattatcaagatagccttccattctcttcacttgtatatgctttc |
4600956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 4615499 - 4615572
Alignment:
| Q |
144 |
tttgtctttcaacaaggactagagattctccctaaagtcacaattgtataaaatccaaatttaccaatcaagag |
217 |
Q |
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| T |
4615499 |
tttgtctttcaacaaggactatagattctctccaaagtcacaattacataaaagccaaattttccaatcaagag |
4615572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 121
Target Start/End: Original strand, 4615331 - 4615440
Alignment:
| Q |
17 |
acagaagaaaacatgtgcaaattgatgaagcaacaatgaccactcattctatttatcatag------tattgtctattatttacccatctctgaatctgg |
110 |
Q |
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| T |
4615331 |
acagaggaaaacattttcaaattgattaagcaacaaagaccactcattat-tttgtcatatatagtctattggttattatttacccatgtctgaatccgg |
4615429 |
T |
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| Q |
111 |
caaattttgga |
121 |
Q |
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| T |
4615430 |
caaattttgga |
4615440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 1280454 - 1280494
Alignment:
| Q |
227 |
tgtccctcttatcaagatagccctccattctcttcacttgt |
267 |
Q |
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| T |
1280454 |
tgtccctatcatcaagatagccctccattctcttcacttgt |
1280494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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