View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5729_low_11 (Length: 271)

Name: NF5729_low_11
Description: NF5729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5729_low_11
NF5729_low_11
[»] chr1 (2 HSPs)
chr1 (18-256)||(7089021-7089259)
chr1 (26-256)||(7668363-7668593)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 7089259 - 7089021
Alignment:
Q  18 gcacagaatttttaatatcattggttactgatgatttctctagagctaacaatacttacattggaaagttaaggttagtgtcctcaatcaatccacattt 117  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7089259 gcacagaatttttaatatcattggtttctgatgatttctctagagctaacaatacttacattggaaagttaaggttagtctcctcaatcaatccacattt 7089160  T
Q  118 tttcatggttaatgcattattattctactgtttacttgatcattaagcaatgaacaggtctaattttctcggcaccaagttcacaatcttagatggtcat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7089159 tttcatggttaatgcattattattctactgtttacttgatcattaagcaatgaacaggtctaattttctcggcaccaagttcacaatcttagatggtcat 7089060  T
Q  218 cctccacatgtgtctttgcttccatcgagttgcaagttg 256  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  7089059 cctccacatgtgtcttcgcttccatcgagttgcaagttg 7089021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 26 - 256
Target Start/End: Complemental strand, 7668593 - 7668363
Alignment:
Q  26 tttttaatatcattggttactgatgatttctctagagctaacaatacttacattggaaagttaaggttagtgtcctcaatcaatccacattttttcatgg 125  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||| ||||| |||| | ||    
T  7668593 tttttaatatcattggtttctgatgatttctctagagctaacaatacttacattggaaagttaaggttagtgtcccatatcaattcacatcttttaa-gg 7668495  T
Q  126 ttaatgcattattattctactgtttacttgatcattaagcaatg-aacaggtctaattttctcggcaccaagttcacaatcttagatggtcatcctccac 224  Q
     |||||||||||||||||| || ||| |||||||||||||||   |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  7668494 ctaatgcattattattctagtgcttagttgatcattaagcaaaataacaggtctaattttctcggcaccaagttcacgatcttggatggtcatcctccac 7668395  T
Q  225 atgtgtctttgcttccatcgagttgcaagttg 256  Q
    |||| |||| ||||||||||||||||||||||    
T  7668394 atgtttcttcgcttccatcgagttgcaagttg 7668363  T

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