View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5729_low_13 (Length: 255)

Name: NF5729_low_13
Description: NF5729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5729_low_13
NF5729_low_13
[»] chr1 (5 HSPs)
chr1 (16-233)||(32805190-32805407)
chr1 (48-207)||(11444058-11444218)
chr1 (47-231)||(32808763-32808946)
chr1 (44-213)||(28201666-28201836)
chr1 (45-85)||(18643349-18643389)
[»] chr4 (2 HSPs)
chr4 (45-198)||(51700312-51700465)
chr4 (132-213)||(26654510-26654591)
[»] chr2 (3 HSPs)
chr2 (45-177)||(19912262-19912394)
chr2 (43-206)||(45276331-45276494)
chr2 (45-87)||(18731424-18731466)
[»] chr3 (3 HSPs)
chr3 (45-177)||(44122057-44122189)
chr3 (46-87)||(9777453-9777494)
chr3 (45-87)||(7642288-7642330)
[»] chr5 (6 HSPs)
chr5 (43-86)||(35104711-35104754)
chr5 (77-177)||(24213347-24213447)
chr5 (106-177)||(24228340-24228411)
chr5 (45-99)||(29681785-29681839)
chr5 (45-87)||(29948562-29948604)
chr5 (140-212)||(29948436-29948509)
[»] scaffold0062 (2 HSPs)
scaffold0062 (45-86)||(19810-19851)
scaffold0062 (45-86)||(29978-30019)


Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 233
Target Start/End: Original strand, 32805190 - 32805407
Alignment:
Q  16 taacaaagggtaaatggagtgctactaattgttatgaataataaatttagtggatatccatccttaatcttctacttttctatagcctttattaataaat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32805190 taacaaagggtaaatggagtgctactaattgttatgaataataaatttagcggatatccatccttaatcttctacttttctataacctttattaataaat 32805289  T
Q  116 gtatgattattaatttttaattgatttgatcattcacatgctcaatcgtgtcctatagatagaactcatattttagtgtaataacacacttgaaaagaaa 215  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||  ||||||||||||||||||||||||||||| |||||||    
T  32805290 gtatgattattaatttttaattgatttgatcattcacatactcaatcatgtcctatagataagactcatattttagtgtaataacacacttgtaaagaaa 32805389  T
Q  216 agaagacaaaaactctta 233  Q
    ||||||||||||||||||    
T  32805390 agaagacaaaaactctta 32805407  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 207
Target Start/End: Complemental strand, 11444218 - 11444058
Alignment:
Q  48 tatgaataataaatttagtggatatccatccttaatcttctacttttctatagcctttattaataaatgtatgattattaatttttaattgatttgatca 147  Q
    |||||||||||| |||||||||| |||||||||||||||| || || ||||| || |||||| | |||||||| ||| |  || |||||   ||||||||    
T  11444218 tatgaataataagtttagtggatgtccatccttaatcttccaccttcctataaccattattagtgaatgtatgcttaatggttcttaatgactttgatca 11444119  T
Q  148 ttcacatgctcaatcgtgtcctatagatagaactcatattttagtgt-aataacacacttg 207  Q
    ||||| |||||| | |||||||||| |||| ||| ||||| || ||| ||| |||||||||    
T  11444118 ttcacttgctcatttgtgtcctataaataggacttatattataatgtgaattacacacttg 11444058  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 231
Target Start/End: Original strand, 32808763 - 32808946
Alignment:
Q  47 ttatgaataataaatttagtggatatccatccttaatcttctacttttctatagcctttattaataaatgtatgattattaatttttaattgatttgatc 146  Q
    |||||||||||||| ||  ||||| |||||||||||||||| || || ||||| ||   |||| | ||| |||| ||| |  |  |||||||||||||      
T  32808763 ttatgaataataaacttcatggatttccatccttaatcttccaccttcctataacccc-attagtgaatatatggttagtggtccttaattgatttgaat 32808861  T
Q  147 attcacatgctcaatcgtgtcctatagatagaactcatattttagtgtaataacacacttgaaaagaaaagaagacaaaaactct 231  Q
    |||||| ||||||||  | | ||||| ||| |||||||||||||| ||||| |||||||||||| || || ||||||||||||||    
T  32808862 attcacttgctcaattattttctataaataaaactcatattttagcgtaatgacacacttgaaatgagaataagacaaaaactct 32808946  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 213
Target Start/End: Complemental strand, 28201836 - 28201666
Alignment:
Q  44 ttgttatgaataataaatttagtggatatccatccttaatcttctacttttctatagccttt-attaataaatgtatgattattaatttttaattgattt 142  Q
    |||| ||||||||||||  |||||||| ||||||||| |||||| || || ||||| || |  |||| | |||||||| ||| || | |||||||| |||    
T  28201836 ttgtcatgaataataaacatagtggatgtccatcctttatcttccaccttcctataaccctccattagtgaatgtatggttagtagtctttaattgcttt 28201737  T
Q  143 gatcattcacatgctcaatcgtgtcctatagatagaactcatattttagtgtaataacacacttgaaaaga 213  Q
    ||| |||||| || ||| |  ||||||||| |||  |||||||||||| ||||||| |||||||| |||||    
T  28201736 gataattcacttgttcatttatgtcctataaatatgactcatattttaatgtaatagcacacttgtaaaga 28201666  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 18643389 - 18643349
Alignment:
Q  45 tgttatgaataataaatttagtggatatccatccttaatct 85  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  18643389 tgttataaataataaatttagtggatatctatccttaatct 18643349  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 51700465 - 51700312
Alignment:
Q  45 tgttatgaataataaatttagtggatatccatccttaatcttctacttttctatagcctttattaataaatgtatgattattaatttttaattgatttga 144  Q
    |||||||||||||| |   ||||||| ||||||||||||||||||| |||||||| |  | |||| | |||||||||||||   || ||||||  |||||    
T  51700465 tgttatgaataatagacacagtggatgtccatccttaatcttctacctttctataactctcattagtgaatgtatgattatcggttcttaattattttga 51700366  T
Q  145 tcattcacatgctcaatcgtgtcctatagatagaactcatattttagtgtaata 198  Q
    ||||||||||||||| | || || |||| | || |||||||| ||| |||||||    
T  51700365 tcattcacatgctcatttgtatcatataaagaggactcatatcttaatgtaata 51700312  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 213
Target Start/End: Original strand, 26654510 - 26654591
Alignment:
Q  132 ttaattgatttgatcattcacatgctcaatcgtgtcctatagatagaactcatattttagtgtaataacacacttgaaaaga 213  Q
    ||||||| |||||| |||||| | |||| | |||||||||||||||   ||||||||||||||||| | ||||||| |||||    
T  26654510 ttaattgctttgattattcacttactcatttgtgtcctatagatagttatcatattttagtgtaatgatacacttgtaaaga 26654591  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 19912262 - 19912394
Alignment:
Q  45 tgttatgaataataaatttagtggatatccatccttaatcttctacttttctatagcctttattaataaatgtatgattattaatttttaattgatttga 144  Q
    |||||||||||||| | ||||||||| |||| ||||||||||| || || ||||| ||  ||||| | |||||||| ||| || |  ||||||| |||||    
T  19912262 tgttatgaataatagacttagtggatgtccacccttaatcttccaccttcctataacccctattattgaatgtatggttagtagtccttaattgctttga 19912361  T
Q  145 tcattcacatgctcaatcgtgtcctatagatag 177  Q
    ||| |||| |||||| | |||||||||| ||||    
T  19912362 tcactcacttgctcatttgtgtcctataaatag 19912394  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 206
Target Start/End: Original strand, 45276331 - 45276494
Alignment:
Q  43 attgttatgaataataaatttagtggatatccatccttaatcttctacttttctatagcctttattaataaatgtatgattattaatttttaattgattt 142  Q
    ||||||| |||||| ||| ||| ||||| ||||||| | |||||| || || ||||| ||  | ||| | |||||||| ||| |  |  ||||| | |||    
T  45276331 attgttacgaataacaaacttaatggatgtccatccctcatcttccaccttcctataacccatgttagtgaatgtatggttagtggtccttaatagtttt 45276430  T
Q  143 gatcattcacatgctcaatcgtgtcctatagatagaactcatattttagtgtaataacacactt 206  Q
    || ||||||| | |||| | |||||||||| |||| ||||||||||||||||||| | ||||||    
T  45276431 gaccattcacttactcatttgtgtcctataaataggactcatattttagtgtaatgatacactt 45276494  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 18731424 - 18731466
Alignment:
Q  45 tgttatgaataataaatttagtggatatccatccttaatcttc 87  Q
    |||||| ||||||||| ||||||||| ||||||||||||||||    
T  18731424 tgttataaataataaacttagtggatgtccatccttaatcttc 18731466  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 44122189 - 44122057
Alignment:
Q  45 tgttatgaataataaatttagtggatatccatccttaatcttctacttttctatagcctttattaataaatgtatgattattaatttttaattgatttga 144  Q
    |||||||||||||||  ||||||||| |||||||||||||||| || || ||||| ||  ||||| | |||||||| ||| |  |  |||||   |||||    
T  44122189 tgttatgaataataagcttagtggatgtccatccttaatcttccaccttcctataaccaatattagtgaatgtatgcttaatggtccttaatgactttga 44122090  T
Q  145 tcattcacatgctcaatcgtgtcctatagatag 177  Q
    |||||||| |||||| | |||||||||| ||||    
T  44122089 tcattcacctgctcatttgtgtcctataaatag 44122057  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 9777494 - 9777453
Alignment:
Q  46 gttatgaataataaatttagtggatatccatccttaatcttc 87  Q
    ||||||||||||||| ||||||||| ||||||||||||||||    
T  9777494 gttatgaataataaaattagtggatgtccatccttaatcttc 9777453  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 7642288 - 7642330
Alignment:
Q  45 tgttatgaataataaatttagtggatatccatccttaatcttc 87  Q
    |||||| ||||||||||||||||||| |||||| |||||||||    
T  7642288 tgttataaataataaatttagtggatgtccatctttaatcttc 7642330  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 35104711 - 35104754
Alignment:
Q  43 attgttatgaataataaatttagtggatatccatccttaatctt 86  Q
    ||||||||||||||| |||||||||||| |||||||||||||||    
T  35104711 attgttatgaataattaatttagtggatgtccatccttaatctt 35104754  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 24213447 - 24213347
Alignment:
Q  77 ccttaatcttctacttttctatagcctttattaataaatgtatgattattaatttttaattgatttgatcattcacatgctcaatcgtgtcctatagata 176  Q
    ||||||||||| || ||  |||| |||  |||| |||||||||| |||||  | |||||||| ||||||||||||| |||||| | |||||||||| |||    
T  24213447 ccttaatcttccaccttcttataacctccattagtaaatgtatggttattggtctttaattggtttgatcattcacttgctcatttgtgtcctataaata 24213348  T
Q  177 g 177  Q
    |    
T  24213347 g 24213347  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 177
Target Start/End: Complemental strand, 24228411 - 24228340
Alignment:
Q  106 attaataaatgtatgattattaatttttaattgatttgatcattcacatgctcaatcgtgtcctatagatag 177  Q
    ||||||| ||||||| |||||  | |||||||| ||||||||||||| |||||||| || ||||||| ||||    
T  24228411 attaatatatgtatggttattggtctttaattggtttgatcattcacttgctcaattgtatcctataaatag 24228340  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 99
Target Start/End: Complemental strand, 29681839 - 29681785
Alignment:
Q  45 tgttatgaataataaatttagtggatatccatccttaatcttctacttttctata 99  Q
    |||||||||||||||| ||||||||| | |||| ||||||||| || ||||||||    
T  29681839 tgttatgaataataaacttagtggatgttcatctttaatcttccacctttctata 29681785  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 29948604 - 29948562
Alignment:
Q  45 tgttatgaataataaatttagtggatatccatccttaatcttc 87  Q
    ||||||||||||| || ||||||||| ||||||||||||||||    
T  29948604 tgttatgaataattaacttagtggatgtccatccttaatcttc 29948562  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 29948509 - 29948436
Alignment:
Q  140 tttgatcattcacatgctca-atcgtgtcctatagatagaactcatattttagtgtaataacacacttgaaaag 212  Q
    ||||||||||||| |||||| || || ||||||| |||  |||| ||||||||||| | |||||||||||||||    
T  29948509 tttgatcattcacttgctcagattgtatcctataaataatactcgtattttagtgtgaaaacacacttgaaaag 29948436  T

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Target: scaffold0062 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 19810 - 19851
Alignment:
Q  45 tgttatgaataataaatttagtggatatccatccttaatctt 86  Q
    ||||||||||||||| |||||||||| | |||||||||||||    
T  19810 tgttatgaataataagtttagtggatgttcatccttaatctt 19851  T

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Target: scaffold0062; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 29978 - 30019
Alignment:
Q  45 tgttatgaataataaatttagtggatatccatccttaatctt 86  Q
    ||||||||||||||| |||||||||| | |||||||||||||    
T  29978 tgttatgaataataagtttagtggatgttcatccttaatctt 30019  T

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