View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5729_low_2 (Length: 510)

Name: NF5729_low_2
Description: NF5729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5729_low_2
NF5729_low_2
[»] chr8 (21 HSPs)
chr8 (188-492)||(15853321-15853632)
chr8 (4-187)||(15853656-15853841)
chr8 (306-492)||(15860683-15860869)
chr8 (355-492)||(15867069-15867205)
chr8 (311-492)||(15846493-15846683)
chr8 (22-164)||(2518594-2518734)
chr8 (22-134)||(13171881-13171992)
chr8 (22-120)||(44681285-44681382)
chr8 (16-63)||(16252868-16252915)
chr8 (16-63)||(28300414-28300461)
chr8 (92-159)||(35643808-35643875)
chr8 (16-87)||(29520593-29520665)
chr8 (1-74)||(36143287-36143361)
chr8 (98-164)||(41971980-41972046)
chr8 (1-108)||(39760682-39760788)
chr8 (89-134)||(41444558-41444603)
chr8 (47-109)||(5908606-5908667)
chr8 (115-171)||(30559724-30559780)
chr8 (16-186)||(32043523-32043692)
chr8 (16-60)||(36069576-36069620)
chr8 (89-161)||(40813329-40813401)
[»] chr3 (18 HSPs)
chr3 (16-171)||(19736929-19737084)
chr3 (16-171)||(19757832-19757987)
chr3 (26-162)||(39600885-39601020)
chr3 (20-175)||(344902-345056)
chr3 (25-171)||(45289286-45289434)
chr3 (16-134)||(36820193-36820308)
chr3 (76-152)||(50960847-50960921)
chr3 (22-152)||(49503768-49503897)
chr3 (89-176)||(41842701-41842788)
chr3 (67-161)||(54128363-54128455)
chr3 (4-38)||(1447956-1447990)
chr3 (14-130)||(26388412-26388527)
chr3 (1-107)||(45728064-45728170)
chr3 (1-161)||(52138718-52138877)
chr3 (350-395)||(4012077-4012122)
chr3 (97-162)||(21200561-21200626)
chr3 (89-134)||(42510246-42510291)
chr3 (95-160)||(48734341-48734406)
[»] chr7 (17 HSPs)
chr7 (5-176)||(39811879-39812049)
chr7 (16-152)||(47848607-47848742)
chr7 (70-156)||(27021902-27021986)
chr7 (1-137)||(30200192-30200323)
chr7 (89-164)||(40169654-40169729)
chr7 (1-152)||(37617862-37618013)
chr7 (92-176)||(35713703-35713787)
chr7 (89-176)||(3457370-3457456)
chr7 (47-152)||(28020928-28021032)
chr7 (89-152)||(31682816-31682879)
chr7 (16-109)||(48736156-48736248)
chr7 (96-162)||(25579281-25579347)
chr7 (67-152)||(31005208-31005291)
chr7 (89-134)||(26742128-26742173)
chr7 (348-400)||(4489133-4489185)
chr7 (16-134)||(36136697-36136814)
chr7 (89-161)||(46356061-46356133)
[»] chr2 (15 HSPs)
chr2 (16-171)||(9556564-9556717)
chr2 (72-176)||(6218957-6219059)
chr2 (41-169)||(11017274-11017399)
chr2 (19-152)||(43752161-43752293)
chr2 (1-134)||(9647841-9647969)
chr2 (11-61)||(21834481-21834531)
chr2 (67-162)||(11412706-11412799)
chr2 (100-176)||(13240935-13241011)
chr2 (16-169)||(7825291-7825445)
chr2 (1-82)||(36039141-36039223)
chr2 (22-161)||(38434890-38435029)
chr2 (1-152)||(8180698-8180848)
chr2 (89-134)||(18958912-18958957)
chr2 (11-152)||(9578917-9579055)
chr2 (77-176)||(12141539-12141636)
[»] chr5 (12 HSPs)
chr5 (21-152)||(6888931-6889061)
chr5 (115-176)||(15986927-15986988)
chr5 (95-176)||(7359450-7359530)
chr5 (13-134)||(14667687-14667813)
chr5 (16-66)||(20077116-20077166)
chr5 (16-63)||(16134481-16134528)
chr5 (97-176)||(42199299-42199378)
chr5 (89-176)||(43475245-43475332)
chr5 (322-388)||(37202021-37202087)
chr5 (43-106)||(14749267-14749329)
chr5 (95-152)||(28676606-28676663)
chr5 (17-84)||(14100253-14100321)
[»] chr4 (17 HSPs)
chr4 (1-176)||(33709837-33710016)
chr4 (22-176)||(54470146-54470299)
chr4 (67-164)||(30621406-30621501)
chr4 (1-108)||(17900398-17900504)
chr4 (16-176)||(50662322-50662480)
chr4 (17-162)||(51252665-51252807)
chr4 (1-50)||(27991730-27991779)
chr4 (1-62)||(44860772-44860833)
chr4 (89-134)||(55768733-55768778)
chr4 (89-134)||(55832989-55833034)
chr4 (70-176)||(28497478-28497581)
chr4 (89-170)||(7092416-7092497)
chr4 (1-152)||(31960028-31960178)
chr4 (1-152)||(56375208-56375358)
chr4 (89-161)||(28236188-28236260)
chr4 (16-79)||(34233318-34233382)
chr4 (96-152)||(50471538-50471594)
[»] chr1 (19 HSPs)
chr1 (1-152)||(9509236-9509386)
chr1 (95-186)||(48431586-48431677)
chr1 (47-152)||(35828764-35828868)
chr1 (89-176)||(40416376-40416463)
chr1 (1-86)||(52442782-52442868)
chr1 (95-176)||(32404716-32404797)
chr1 (31-152)||(39140468-39140588)
chr1 (1-133)||(9599627-9599758)
chr1 (47-171)||(43423683-43423806)
chr1 (16-65)||(29578231-29578280)
chr1 (70-176)||(2544587-2544691)
chr1 (16-63)||(16273122-16273169)
chr1 (17-162)||(16943109-16943252)
chr1 (84-171)||(36339998-36340085)
chr1 (47-171)||(51812489-51812612)
chr1 (1-152)||(1210663-1210813)
chr1 (8-127)||(8391697-8391815)
chr1 (16-79)||(4379938-4380002)
chr1 (89-161)||(41611811-41611883)
[»] chr6 (9 HSPs)
chr6 (95-176)||(2079351-2079432)
chr6 (21-152)||(33083996-33084126)
chr6 (1-83)||(33998285-33998368)
chr6 (10-63)||(7513285-7513338)
chr6 (97-161)||(9593911-9593975)
chr6 (99-171)||(9749419-9749491)
chr6 (16-109)||(6641666-6641758)
chr6 (335-380)||(15521925-15521970)
chr6 (16-122)||(12134145-12134250)
[»] scaffold0018 (2 HSPs)
scaffold0018 (76-152)||(44082-44156)
scaffold0018 (16-152)||(31401-31536)


Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 188 - 492
Target Start/End: Complemental strand, 15853632 - 15853321
Alignment:
Q  188 aactacacgcttgtcgtatcacaagagttttttaaaactaaacgcttgtcttgtaggataaagagagtttttaataaagagattgcataataaaaaatta 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||    
T  15853632 aactacacgcttgtcgtatcacaagagttttttaaaactaaacgcttgtcttgtcggataacgagagtttttaatgaagagattgcataataaaaaatta 15853533  T
Q  288 -------tactctggtttcagggatgtaggcacaattggctgaactccgtagtcaatcattgtattcttgtgcgtttatttatctgttcactttagaatt 380  Q
           ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  15853532 caaccactactctggtttcagggatgtaggcacaattggccgaactccgtaatcaatcattgtattcatgtgcgtttatttatctgttcactttagaatt 15853433  T
Q  381 gggtttgctgttctaacataaaggatatgcaggaaataattcctttttatgggaaggtacaataccaagggttatcatcacagaccctgatcaaattaag 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15853432 gggtttgctgttctaacataaaggatatgcaggaaataattcctttttatgggaaggtacaataccaagggttatcatcacagaccctgatcaaattaag 15853333  T
Q  481 gatgtctttaac 492  Q
    ||||||||||||    
T  15853332 gatgtctttaac 15853321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 4 - 187
Target Start/End: Complemental strand, 15853841 - 15853656
Alignment:
Q  4 agatatgaagaagttgtgttggatgtgtggtaagaagagatgagataagattagaaatgaaaaattagagatagagttggggtg--cagcacatatagta 101  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||    
T  15853841 agatatgaagaagttgtgttggatgtgtgataagaagatatgagataagattagaaatgaaaaattagagatagagttggggtgggcagcacctatagta 15853742  T
Q  102 gaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagattttatagtaatgagaaatgatcagac 187  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15853741 gaaaagatcgtgaaaaatgggtttaggtggttttggtgtgtagagagaagaaatgtagattttatagtaatgagaaatgatcagac 15853656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 306 - 492
Target Start/End: Complemental strand, 15860869 - 15860683
Alignment:
Q  306 gtaggcacaattggctgaactccgtagtcaatcattgtattcttgtgcgtttatttatctgttcactttagaattgggtttgctgttctaacataaagga 405  Q
    |||| |||||||||  |||||  ||| |||| |||||||||| | ||| || |||||||||||  ||||||| ||||||||| |||||||||||||||||    
T  15860869 gtagacacaattggtagaactttgtaatcaagcattgtattcctatgctttaatttatctgtttgctttagagttgggtttgttgttctaacataaagga 15860770  T
Q  406 tatgcaggaaataattcctttttatgggaaggtacaataccaagggttatcatcacagaccctgatcaaattaaggatgtctttaac 492  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15860769 tatgcaggaaagaattcctttttatgggaaggtacaataccaagggttatcatcacagaccctgatcaaattaaggatgtctttaac 15860683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 355 - 492
Target Start/End: Complemental strand, 15867205 - 15867069
Alignment:
Q  355 tttatttatctgttcactttagaattgggtttgctgttctaacataaaggatatgcaggaaataattcctttttatgggaaggtacaataccaagggtta 454  Q
    |||||||||||||| | |||||| |||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||| ||||    
T  15867205 tttatttatctgttta-tttagagttgggtttgcggttctaacataaaggatatgcaggaaaaaaatcctttttatgggaaggtacaacaccaagagtta 15867107  T
Q  455 tcatcacagaccctgatcaaattaaggatgtctttaac 492  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  15867106 tcatcgcagaccctgatcaaattaaggaagtctttaac 15867069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 311 - 492
Target Start/End: Complemental strand, 15846683 - 15846493
Alignment:
Q  311 cacaattggctgaactccgtagtcaatcattgtattcttgtgcgtttatttatctgttcactttagaattgggttt-----gctgttctaacataaagga 405  Q
    |||||||||  |||||  ||| |||| ||||| ||||||| |||||||| |||||||| ||||| || | ||||||     | |||||||||||||||||    
T  15846683 cacaattggtagaactttgtaatcaagcattgcattcttgcgcgtttatctatctgtttactttggagtcgggtttaatttgttgttctaacataaagga 15846584  T
Q  406 tat----gcaggaaataattcctttttatgggaaggtacaataccaagggttatcatcacagaccctgatcaaattaaggatgtctttaac 492  Q
    |||    |||||||| ||||||||||||||||| ||| ||| |||||| ||||||||||||||||||||||||||||||||  ||||||||    
T  15846583 tatatatgcaggaaagaattcctttttatgggacggtgcaacaccaagtgttatcatcacagaccctgatcaaattaaggaaatctttaac 15846493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 164
Target Start/End: Complemental strand, 2518734 - 2518594
Alignment:
Q  22 ttggatgtgtggtaagaagagatgagataagattagaaatgaaaaattagagatagagttggggtgcagcacatatagtagaaaagatcgtgaaaaatag 121  Q
    |||||||||||||||||  |||||||||| |||||||||||| |||||||||| | | |||||||  ||||| |  |||||||||||| ||| |||||||    
T  2518734 ttggatgtgtggtaagactagatgagataggattagaaatgacaaattagagagaaaattggggt--agcacctcaagtagaaaagatggtggaaaatag 2518637  T
Q  122 gtttaggtggttttggtgtgtagagagaagaaatgtagatttt 164  Q
    |||||||||||||   | |||||||||||||  ||||||||||    
T  2518636 gtttaggtggtttgattatgtagagagaagacttgtagatttt 2518594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 13171992 - 13171881
Alignment:
Q  22 ttggatgtgtggtaagaagagatgagataagattagaaatgaaaa-attagagatagagttggggtgcagcacatatagtagaaaagatcgtgaaaaata 120  Q
    |||||||||| ||||||  ||| | |||| |||||||||||| || |||||||| ||||||||||   ||||| ||||||||||||||| ||| ||||||    
T  13171992 ttggatgtgtagtaagactagacgggataggattagaaatgacaagattagagagagagttgggga--agcacctatagtagaaaagatggtggaaaata 13171895  T
Q  121 ggtttaggtggttt 134  Q
     | |||||||||||    
T  13171894 tgcttaggtggttt 13171881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 120
Target Start/End: Complemental strand, 44681382 - 44681285
Alignment:
Q  22 ttggatgtgtggtaagaagagatgagataagattagaaatga-aaaattagagatagagttggggtgcagcacatatagtagaaaagatcgtgaaaaata 120  Q
    |||||||||||||||||  ||| ||||||||||||||||||| || |||||||| | ||||| |||  ||||| |||| |||||||||| ||| ||||||    
T  44681382 ttggatgtgtggtaagactagacgagataagattagaaatgacaacattagagagacagttgtggt--agcacctataatagaaaagatggtggaaaata 44681285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 16252868 - 16252915
Alignment:
Q  16 gttgtgttggatgtgtggtaagaagagatgagataagattagaaatga 63  Q
    |||||||||||||||||||||||  ||||||||||| |||||||||||    
T  16252868 gttgtgttggatgtgtggtaagattagatgagataaaattagaaatga 16252915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 28300461 - 28300414
Alignment:
Q  16 gttgtgttggatgtgtggtaagaagagatgagataagattagaaatga 63  Q
    |||||||||||||||| ||||||  |||||||||||||||||||||||    
T  28300461 gttgtgttggatgtgtagtaagactagatgagataagattagaaatga 28300414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 35643875 - 35643808
Alignment:
Q  92 acatatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtag 159  Q
    |||||||||||||||||| ||| |||||| | ||||||||||| ||  ||||||||||||| ||||||    
T  35643875 acatatagtagaaaagatggtggaaaatatgcttaggtggtttgggcatgtagagagaagacatgtag 35643808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 29520593 - 29520665
Alignment:
Q  16 gttgtgttggatgtgtggtaagaagagatgagataagattagaaatga-aaaattagagatagagttggggtg 87  Q
    |||| ||||||||||||||||||  ||||| |||| |||||||||||| |  |||||||| ||||||||||||    
T  29520593 gttgcgttggatgtgtggtaagactagatgggataggattagaaatgataccattagagagagagttggggtg 29520665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 36143287 - 36143361
Alignment:
Q  1 agcagatatgaagaagttgtgttggatgtgtggtaagaagagatgagataagattagaaatgaaaa-attagaga 74  Q
    |||||| |||| || ||||||||||  |||||||||||  |||||||||| ||||||||| ||||| ||||||||    
T  36143287 agcagagatgaggatgttgtgttggtcgtgtggtaagactagatgagataggattagaaaggaaaagattagaga 36143361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 98 - 164
Target Start/End: Complemental strand, 41972046 - 41971980
Alignment:
Q  98 agtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagatttt 164  Q
    |||||||||||| ||| |||||| ||||||||||||| |   |||||||||||||  ||||||||||    
T  41972046 agtagaaaagatggtggaaaataagtttaggtggtttggacatgtagagagaagacgtgtagatttt 41971980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 39760788 - 39760682
Alignment:
Q  1 agcagatatgaagaagttgtgttggatgtgtggtaagaagagatgagataagattagaaatga-aaaattagagatagagttggggtgcagcacatatag 99  Q
    |||||| |||| || |||||||||||||||||||| ||  |||  ||||| || ||||||||| || |||||||| ||||||||| |  ||||| ||| |    
T  39760788 agcagagatgaggatgttgtgttggatgtgtggtaggattagacaagataggagtagaaatgataacattagagacagagttgggtt--agcacctatcg 39760691  T
Q  100 tagaaaaga 108  Q
    |||||||||    
T  39760690 tagaaaaga 39760682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 41444603 - 41444558
Alignment:
Q  89 agcacatatagtagaaaagatcgtgaaaaataggtttaggtggttt 134  Q
    ||||| ||||||||||||||| ||| ||| ||||||||||||||||    
T  41444603 agcacctatagtagaaaagatggtggaaactaggtttaggtggttt 41444558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 5908606 - 5908667
Alignment:
Q  47 gataagattagaaatga-aaaattagagatagagttggggtgcagcacatatagtagaaaagat 109  Q
    ||||||||||||||||| || |||||||| |||||||||||  || || |||||||||||||||    
T  5908606 gataagattagaaatgacaacattagagagagagttggggt--agaacctatagtagaaaagat 5908667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 30559724 - 30559780
Alignment:
Q  115 aaaataggtttaggtggttttggtgtgtagagagaagaaatgtagattttatagtaa 171  Q
    |||||||| ||||||||||| ||  | ||||||||||| ||||||||||| ||||||    
T  30559724 aaaataggcttaggtggtttgggcatttagagagaagacatgtagattttgtagtaa 30559780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 32043523 - 32043692
Alignment:
Q  16 gttgtgttggatgtgtggtaagaagagatgagataagattagaaatga-aaaattagagatagagttggggtgcagcacatatagtagaaaagatcgtga 114  Q
    |||| ||||||||||||||||||  ||| | ||||  ||||||||||| || |||||||| |||||||||||  | ||| ||||||| ||||||| ||      
T  32043523 gttgcgttggatgtgtggtaagactagacgggatagaattagaaatgacaacattagagagagagttggggt--atcacctatagtacaaaagatggtag 32043620  T
Q  115 aaaataggtttaggtggttttggtgtgtagagagaagaaatgtagattttatagtaatgagaaatgatcaga 186  Q
    ||| |||  || |||||||| |   |||||||||||||  ||| ||| || |||||| |||||  |||||||    
T  32043621 aaactagactttggtggtttggccatgtagagagaagacctgtggatgttgtagtaaggagaatagatcaga 32043692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 36069576 - 36069620
Alignment:
Q  16 gttgtgttggatgtgtggtaagaagagatgagataagattagaaa 60  Q
    |||||||||||||||||||||||  ||| | ||||||||||||||    
T  36069576 gttgtgttggatgtgtggtaagactagacgggataagattagaaa 36069620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 40813329 - 40813401
Alignment:
Q  89 agcacatatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagat 161  Q
    ||||| ||||||||||||| | ||  ||||||||||||| |||||| ||  |||||||||||||  |||||||    
T  40813329 agcacctatagtagaaaagttggtagaaaataggtttagatggtttgggcatgtagagagaagatctgtagat 40813401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 171
Target Start/End: Original strand, 19736929 - 19737084
Alignment:
Q  16 gttgtgttggatgtgtggtaagaagagatgagataagattagaaatgaaaa-attagagatagagttggggtgcagcacatatagtagaaaagatcgtga 114  Q
    ||||||||||||| |||||||||  ||| | |||| |||||||| |||||  |||||||| |||||||||| ||||||| ||||||||||||||| ||      
T  19736929 gttgtgttggatgagtggtaagactagacgggatacgattagaagtgaaatcattagagagagagttgggg-gcagcacctatagtagaaaagatggtag 19737027  T
Q  115 aaaataggtttaggtggttttggtgtgtagagagaagaaatgtagattttatagtaa 171  Q
    ||||||||||||||||||||  |  || ||||||||||  ||||||| || ||||||    
T  19737028 aaaataggtttaggtggtttgagcatgcagagagaagacctgtagatgttgtagtaa 19737084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 171
Target Start/End: Original strand, 19757832 - 19757987
Alignment:
Q  16 gttgtgttggatgtgtggtaagaagagatgagataagattagaaatgaaaa-attagagatagagttggggtgcagcacatatagtagaaaagatcgtga 114  Q
    ||||||||||||| |||||||||  | | |||||| |||||||| |||||  |||||||| |||||||||| ||||||| ||||||||||||||| ||      
T  19757832 gttgtgttggatgagtggtaagactacacgagatacgattagaagtgaaatcattagagagagagttgggg-gcagcacctatagtagaaaagatggtag 19757930  T
Q  115 aaaataggtttaggtggttttggtgtgtagagagaagaaatgtagattttatagtaa 171  Q
    ||||||||||||||||||||  |  || ||||||||||  ||||||| || ||||||    
T  19757931 aaaataggtttaggtggtttgagcatgcagagagaagacctgtagatgttgtagtaa 19757987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 26 - 162
Target Start/End: Complemental strand, 39601020 - 39600885
Alignment:
Q  26 atgtgtggtaagaagagatgagataagattagaaatgaaaa-attagagatagagttggggtgcagcacatatagtagaaaagatcgtgaaaaataggtt 124  Q
    |||||||||||||  ||||| ||||||||||||||||| || |||||||| |||||||||||  || || ||||||||||||||| ||| |||| | | |    
T  39601020 atgtgtggtaagactagatgggataagattagaaatgacaacattagagagagagttggggt--agtacctatagtagaaaagatggtggaaaacaagct 39600923  T
Q  125 taggtggttttggtgtgtagagagaagaaatgtagatt 162  Q
    |||||||||||||  |||| ||||||||  ||||||||    
T  39600922 taggtggttttggcatgtaaagagaagacctgtagatt 39600885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 345056 - 344902
Alignment:
Q  20 tgttggatgtgtggtaagaagagatgagataagattagaaatga-aaaattagagatagagttggggtgcagcacatatagtagaaaagatcgtgaaaaa 118  Q
    |||||||| ||||||||||  ||| |||||| ||||||||||||  | |||||||| |||||||||||  ||||| |||||||||||||||  |  ||||    
T  345056 tgttggatttgtggtaagactagacgagataggattagaaatgatgacattagagagagagttggggt--agcacttatagtagaaaagatgttagaaaa 344959  T
Q  119 taggtttaggtggttttggtgtgtagagagaagaaatgtagattttatagtaatgag 175  Q
    |||| ||| || |||| |   |||||||||| ||  |||| ||||| ||||||||||    
T  344958 taggcttaagtagtttggtcatgtagagagaggacctgtaaattttttagtaatgag 344902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 171
Target Start/End: Complemental strand, 45289434 - 45289286
Alignment:
Q  25 gatgtgtggtaagaagagatgagataagattagaaatgaaaaattagagatagag--ttggggtgcagcacatat--agtagaaaagatcgtgaaaaata 120  Q
    |||||||| |||||  ||| | ||||||||||||||||| | |||||||| ||||  |||||||  ||||| |||  |||||||||||| ||| ||||||    
T  45289434 gatgtgtgataagactagacgggataagattagaaatgacacattagagagagagagttggggt--agcacctattcagtagaaaagatggtggaaaata 45289337  T
Q  121 ggtttaggtggttttggtgtgtagagagaagaaatgtagattttatagtaa 171  Q
    || ||||||||||| ||   |||||||||| |  |||||||||| ||||||    
T  45289336 ggcttaggtggtttgggcacgtagagagaacacttgtagattttgtagtaa 45289286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 36820308 - 36820193
Alignment:
Q  16 gttgtgttggatgtgtggtaagaagagatgagataagattagaaatga-aaaattagagatagagttggggtgcagcacatatagtagaaaagatcgtga 114  Q
    |||| ||||||||||||||||||  ||| |||||| ||||||||||||  | |||||||  |||||||||||  ||||| |||| ||| |||||| |||     
T  36820308 gttgcgttggatgtgtggtaagactagacgagataggattagaaatgacgacattagag--agagttggggt--agcacctatattagcaaagatggtgg 36820213  T
Q  115 aaaataggtttaggtggttt 134  Q
    ||| |||| |||||||||||    
T  36820212 aaactaggcttaggtggttt 36820193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 76 - 152
Target Start/End: Complemental strand, 50960921 - 50960847
Alignment:
Q  76 agagttggggtgcagcacatatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaaga 152  Q
    |||||||||||  ||||| ||||||||||||||| ||  |||||||| ||||||||||| ||  |||||||||||||    
T  50960921 agagttggggt--agcacctatagtagaaaagatggtagaaaataggcttaggtggtttgggcatgtagagagaaga 50960847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 49503897 - 49503768
Alignment:
Q  22 ttggatgtgtggtaagaagagatgagataagattagaaatgaaaa-attagagatagagttggggtgcagcacatatagtagaaaagatcgtgaaaaata 120  Q
    ||||||| |||||||||  ||| |||||| |||| | ||||| |  |||||||| ||||||  |||  ||||| ||||||||||||||| ||  ||||||    
T  49503897 ttggatgagtggtaagactagacgagataggattgggaatgacaccattagagagagagttcaggt--agcacctatagtagaaaagatggtagaaaata 49503800  T
Q  121 ggtttaggtggttttggtgtgtagagagaaga 152  Q
    || ||||||||||| ||  |||||||||||||    
T  49503799 ggcttaggtggtttgggcatgtagagagaaga 49503768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 41842788 - 41842701
Alignment:
Q  89 agcacatatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagattttatagtaatgaga 176  Q
    ||||| ||||||||||||||| ||| |||  ||  ||||||||||| ||| |||||||||||||   ||||||| | |||||||||||    
T  41842788 agcacctatagtagaaaagatggtggaaaccagtcttaggtggtttgggtatgtagagagaagagcggtagattctgtagtaatgaga 41842701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 161
Target Start/End: Original strand, 54128363 - 54128455
Alignment:
Q  67 attagagatagagttggggtgcagcacatatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagat 161  Q
    |||||||| || ||||||||  ||||| ||||||||||||||| ||  |||||||| ||||||||||| ||  |||||||| ||||  |||||||    
T  54128363 attagagagagtgttggggt--agcacctatagtagaaaagatggtagaaaataggcttaggtggtttgggcatgtagagaaaagacctgtagat 54128455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 1447990 - 1447956
Alignment:
Q  4 agatatgaagaagttgtgttggatgtgtggtaaga 38  Q
    |||||||||||||||||||||||||||| ||||||    
T  1447990 agatatgaagaagttgtgttggatgtgtagtaaga 1447956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 26388412 - 26388527
Alignment:
Q  14 aagttgtgttggatgtgtggtaagaagagatgagataagattagaaatgaaaa-attagagatagagttggggtgcagcacatatagtagaaaagatcgt 112  Q
    |||||| |||||||||||||| |||  |||| | ||| |||||||||| |||  |||||| ||||||||| | ||  |||| |||| |||||||||| ||    
T  26388412 aagttgcgttggatgtgtggttagactagattatatatgattagaaattaaaccattagacatagagttgagatg--gcacctataatagaaaagatggt 26388509  T
Q  113 gaaaaataggtttaggtg 130  Q
      ||||||||||||||||    
T  26388510 agaaaataggtttaggtg 26388527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 45728064 - 45728170
Alignment:
Q  1 agcagatatgaagaagttgtgttggatgtgtggtaagaagagatgagataagattagaaatgaaa--aattagagatagagttggggtgcagcacatata 98  Q
    |||||| |||| || |||| | |||||| ||||||||| |||| || ||| |||||||||||| |  | ||||||| ||||| |||||  ||||||||||    
T  45728064 agcagagatgaggatgttgcgctggatgagtggtaagacgagacgaaataggattagaaatgacatcatttagagagagagtgggggt--agcacatata 45728161  T
Q  99 gtagaaaag 107  Q
    |||||||||    
T  45728162 gtagaaaag 45728170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 52138718 - 52138877
Alignment:
Q  1 agcagatatgaagaagttgtgttggatgtgtggtaagaagagatgagataagattagaaatgaaaa-attagagatagagttggggtgcagcacatatag 99  Q
    |||||| |||| || |||| |||||||| |||||||||  |||   |||| |||||| ||||| |  |||||||| ||||| |||||  ||||| |||||    
T  52138718 agcagagatgaggatgttgcgttggatgagtggtaagactagacatgataggattaggaatgacaccattagagagagagtgggggt--agcacctatag 52138815  T
Q  100 tagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagat 161  Q
    |||||||| | ||  |||||||| |||| |||||| ||  |||||||||||||  |||||||    
T  52138816 tagaaaagttggtagaaaataggcttagatggtttgggcatgtagagagaagacctgtagat 52138877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 395
Target Start/End: Complemental strand, 4012122 - 4012077
Alignment:
Q  350 gtgcgtttatttatctgttcactttagaattgggtttgctgttcta 395  Q
    ||||||||||||||||||  |||||||| | |||||||||||||||    
T  4012122 gtgcgtttatttatctgtctactttagagtcgggtttgctgttcta 4012077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 162
Target Start/End: Original strand, 21200561 - 21200626
Alignment:
Q  97 tagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagatt 162  Q
    ||||||||||||| ||| ||| |||  ||||||||||| ||  ||||||||||||| |||||||||    
T  21200561 tagtagaaaagatggtggaaactagacttaggtggtttgggcatgtagagagaagacatgtagatt 21200626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 42510291 - 42510246
Alignment:
Q  89 agcacatatagtagaaaagatcgtgaaaaataggtttaggtggttt 134  Q
    ||||| ||||||||||||||| ||| |||||||| |||||||||||    
T  42510291 agcacctatagtagaaaagatagtggaaaataggcttaggtggttt 42510246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 48734406 - 48734341
Alignment:
Q  95 tatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtaga 160  Q
    |||||||||| |||| ||  |||||||| ||||||||||| ||  |||||||||||||| ||||||    
T  48734406 tatagtagaacagatggtagaaaataggcttaggtggtttgggcatgtagagagaagaactgtaga 48734341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 39811879 - 39812049
Alignment:
Q  5 gatatgaagaagttgtgttggatgtgtggtaagaagagatgagataagattagaaatgaaaa-attagagatagagttggggtgcagcacatatagtaga 103  Q
    ||||||| || ||||  |||||||||||||||||  ||| | |||| |||||||||||| || |||||||| ||||||||||  |||||| |||  ||||    
T  39811879 gatatgaggatgttgctttggatgtgtggtaagactagacgtgataggattagaaatgacaacattagagagagagttgggg--cagcacctatcataga 39811976  T
Q  104 aaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagattttatagtaatgaga 176  Q
    ||| || ||||||| | || |||||| |||| ||  ||||||||||||| ||||||||| |||||||| ||||    
T  39811977 aaaaatggtgaaaactcggcttaggtagtttgggcatgtagagagaagagatgtagattctatagtaaggaga 39812049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 47848607 - 47848742
Alignment:
Q  16 gttgtgttggatgtgtggtaagaagagatgagataagattagaaatgaaaa-attagagatagagttggggtgcagcacatatagtagaaaagatcgtga 114  Q
    |||||||||||||||||||||||  ||| | |||| ||| |||| ||| || |||||||| |||||||||||  ||| | ||||||||||||||| |||     
T  47848607 gttgtgttggatgtgtggtaagactagacgggataggatcagaagtgataacattagagagagagttggggt--agcgcctatagtagaaaagatggtgg 47848704  T
Q  115 aaaataggtttaggtggttttggtgtgtagagagaaga 152  Q
    |||||||| ||||||||||| ||  ||| |||||||||    
T  47848705 aaaataggcttaggtggtttgggcatgtcgagagaaga 47848742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 156
Target Start/End: Complemental strand, 27021986 - 27021902
Alignment:
Q  70 agagatagagttggggtgcagcacatatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatg 156  Q
    ||||| |||||||||||  ||||| ||||||||||||| | ||||||| |||| ||||||||||| ||  |||||||||||||||||    
T  27021986 agagagagagttggggt--agcacctatagtagaaaagttggtgaaaactaggcttaggtggtttgggcatgtagagagaagaaatg 27021902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 30200323 - 30200192
Alignment:
Q  1 agcagatatgaagaagttgtgttggatgtgtggtaagaagagatgagataagattagaaatga-aaaattagagatagagttggggtgcagcacatatag 99  Q
    |||||| |||| || |||||||||||||||||||||||  ||||| |||| |||||||||||| || |||||    |||||| ||||  | ||| |||||    
T  30200323 agcagagatgaggatgttgtgttggatgtgtggtaagattagatgggatatgattagaaatgacaacattag----agagttagggt--aacacctatag 30200230  T
Q  100 tagaaaagatcgtgaaaaataggtttaggtggttttgg 137  Q
    |||||||||| ||| ||| |||| ||||||| ||||||    
T  30200229 tagaaaagatggtggaaactaggcttaggtgattttgg 30200192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 164
Target Start/End: Original strand, 40169654 - 40169729
Alignment:
Q  89 agcacatatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagatttt 164  Q
    ||||| ||||||||||||||| ||| |||||||| ||||||||||| ||  |||||||| |||| | |||||||||    
T  40169654 agcacttatagtagaaaagatggtggaaaataggcttaggtggtttgggcatgtagagataagacacgtagatttt 40169729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 37617862 - 37618013
Alignment:
Q  1 agcagatatgaagaagttgtgttggatgtgtggtaagaagagatgagataagattagaaatgaaaa-attagagatagagttggggtgcagcacatatag 99  Q
    |||||| |||| || |||| |||||||| |||||||||  |||  ||||| |||||| ||||| |  |||||||| ||||| |||||  ||||| |||||    
T  37617862 agcagagatgaggatgttgcgttggatgagtggtaagactagacaagataggattaggaatgacaccattagagagagagtgggggt--agcacctatag 37617959  T
Q  100 tagaaaagatcgt-gaaaaataggtttaggtggttttggtgtgtagagagaaga 152  Q
    |||||||| | || |||||||||| |||| |||||| ||  |||||||||||||    
T  37617960 tagaaaagttggtagaaaaataggcttagatggtttgggcatgtagagagaaga 37618013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 35713703 - 35713787
Alignment:
Q  92 acatatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagattttatagtaatgaga 176  Q
    ||||||||| ||||| || ||| |||||||| ||||||||||| ||  |||||||||||||  |||| ||||| |||||| ||||    
T  35713703 acatatagttgaaaaaatggtggaaaataggcttaggtggtttgggcatgtagagagaagacttgtacattttgtagtaaggaga 35713787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 3457370 - 3457456
Alignment:
Q  89 agcacatatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagattttatagtaatgaga 176  Q
    ||||| ||||||||||||||  ||||||  |||||||||||||||| ||  |  |||||||||| |||||||| || |||||||||||    
T  3457370 agcacttatagtagaaaagactgtgaaac-taggtttaggtggtttgggcattcagagagaagacatgtagatgttgtagtaatgaga 3457456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 152
Target Start/End: Original strand, 28020928 - 28021032
Alignment:
Q  47 gataagattagaaatgaaaa-attagagatagagttggggtgcagcacatatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtaga 145  Q
    |||| |||| ||||||| || |||||||| |||||||||||  ||||| ||| ||||||||||| ||| ||| | || ||||||||||| ||  ||||||    
T  28020928 gatatgattcgaaatgataacattagagaaagagttggggt--agcacttatcgtagaaaagatggtggaaacttggcttaggtggtttgggcatgtaga 28021025  T
Q  146 gagaaga 152  Q
    |||||||    
T  28021026 gagaaga 28021032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 152
Target Start/End: Complemental strand, 31682879 - 31682816
Alignment:
Q  89 agcacatatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaaga 152  Q
    ||||||||||||||||||| | ||  |||||||| |||| |||||| ||| |||||||||||||    
T  31682879 agcacatatagtagaaaagttggtagaaaataggcttagatggtttgggtatgtagagagaaga 31682816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 48736248 - 48736156
Alignment:
Q  16 gttgtgttggatgtgtggtaagaagagatgagataagattagaaatga-aaaattagagatagagttggggtgcagcacatatagtagaaaagat 109  Q
    |||| |||| |||||||||||||  ||||||||||| |||||||||||  | |||| ||| |||||||||||  ||||| || ||||||||||||    
T  48736248 gttgcgttgaatgtgtggtaagactagatgagataaaattagaaatgacgacattatagagagagttggggt--agcacctacagtagaaaagat 48736156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 25579347 - 25579281
Alignment:
Q  96 atagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagatt 162  Q
    |||| |||||| || ||| |||||||| ||||||||||| ||  ||||||||||||| |||||||||    
T  25579347 atagcagaaaaaatggtggaaaataggcttaggtggtttggggatgtagagagaagacatgtagatt 25579281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 31005208 - 31005291
Alignment:
Q  67 attagagatagagttggggtgcagcacatatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaaga 152  Q
    |||||||| ||||| |||||  ||||| ||||||||||||| | ||  ||||||||||||| |||||| ||  |||||||||||||    
T  31005208 attagagagagagtgggggt--agcacctatagtagaaaagttggtagaaaataggtttagatggtttgggcatgtagagagaaga 31005291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 26742173 - 26742128
Alignment:
Q  89 agcacatatagtagaaaagatcgtgaaaaataggtttaggtggttt 134  Q
    ||||| ||||||||||||||| ||| |||||||| |||||||||||    
T  26742173 agcacctatagtagaaaagatggtggaaaataggattaggtggttt 26742128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 400
Target Start/End: Complemental strand, 4489185 - 4489133
Alignment:
Q  348 ttgtgcgtttatttatctgttcactttagaattgggtttgctgttctaacata 400  Q
    |||||||||||||||| |||| |||||||||   ||||||||| |||||||||    
T  4489185 ttgtgcgtttatttatatgtttactttagaaccaggtttgctggtctaacata 4489133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 36136697 - 36136814
Alignment:
Q  16 gttgtgttggatgtgtggtaagaagagatgagataagattagaaatga-aaaattagagatagagttggggtgcagcacatatagtagaaaagatcgtga 114  Q
    ||||||||||||| |||||||||  ||| | |||| | |||| ||||| |  |||||||| |||||||||||  ||||| ||||||||||||||| ||      
T  36136697 gttgtgttggatgggtggtaagactagaagggataggtttaggaatgacaccattagagagagagttggggt--agcacctatagtagaaaagatggtag 36136794  T
Q  115 aaaataggtttaggtggttt 134  Q
    |||||||  |||||| ||||    
T  36136795 aaaatagtcttaggttgttt 36136814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 46356133 - 46356061
Alignment:
Q  89 agcacatatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagat 161  Q
    ||||| ||||||||||||| | ||  ||||||||||||| |||||| ||  ||||||||||||| | ||||||    
T  46356133 agcacctatagtagaaaagttggtagaaaataggtttagatggtttgggcatgtagagagaagacacgtagat 46356061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 171
Target Start/End: Complemental strand, 9556717 - 9556564
Alignment:
Q  16 gttgtgttggatgtgtggtaagaagagatgagataagattagaaatga-aaaattagagatagagttggggtgcagcacatatagtagaaaagatcgtga 114  Q
    |||||||||||||||||||||||  ||| | |||| |||||||||||| || |||||||| | |||||||||  | ||| |||||||||||| || |||     
T  9556717 gttgtgttggatgtgtggtaagattagacgggatatgattagaaatgacaacattagagagaaagttggggt--aacacttatagtagaaaa-atggtgg 9556621  T
Q  115 aaaataggtttaggtggttttggtgtgtagagagaagaaatgtagattttatagtaa 171  Q
    |||||||| ||||||||||| ||  ||||||||||||| | ||||||| | ||||||    
T  9556620 aaaataggcttaggtggtttaggcatgtagagagaagacaagtagattctgtagtaa 9556564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 176
Target Start/End: Original strand, 6218957 - 6219059
Alignment:
Q  72 agatagagttggggtgcagcacatatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagattttatagtaa 171  Q
    |||||||||||||||  ||||| ||||||||||||||| ||| | |||||| ||||||||||| |   ||||||||| ||| ||||||||| | ||||||    
T  6218957 agatagagttggggt--agcacttatagtagaaaagatagtggataataggcttaggtggtttggacatgtagagaggagatatgtagattatgtagtaa 6219054  T
Q  172 tgaga 176  Q
     ||||    
T  6219055 ggaga 6219059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 41 - 169
Target Start/End: Original strand, 11017274 - 11017399
Alignment:
Q  41 agatgagataagattagaaatgaaaa-attagagatagagttggggtgcagcacatatagtagaaaagatcgtgaaaaataggtttaggtggttttggtg 139  Q
    ||||||||||||||||| |||||||| |||| |||  |||||| |||  ||||| ||||||||||||||||||| ||| | || ||| ||||||| |||     
T  11017274 agatgagataagattaggaatgaaaatattaaaga--gagttgaggt--agcacctatagtagaaaagatcgtggaaactcggcttaagtggtttgggta 11017369  T
Q  140 tgtagagagaagaaatgtagattttatagt 169  Q
    ||| |||||||||   ||||||||| ||||    
T  11017370 tgtggagagaagacccgtagattttgtagt 11017399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 43752293 - 43752161
Alignment:
Q  19 gtgttggatgtgtggtaagaagagatgagataagattagaaatga-aaaattagagatagagttggggtgcagcacatatagtagaaaagatcgtgaaaa 117  Q
    |||||||||||| ||||| |  ||||| ||||||||||||| |||  | |||||||| |||||||||||  ||||| ||||||||||||| | ||  |||    
T  43752293 gtgttggatgtgcggtaaaaccagatgggataagattagaactgaccatattagagagagagttggggt--agcacctatagtagaaaaggtggtagaaa 43752196  T
Q  118 ataggtttaggtggttttggtgtgtagagagaaga 152  Q
    ||||| ||||||| ||| |   |||||||||||||    
T  43752195 ataggcttaggtgatttggacatgtagagagaaga 43752161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 9647969 - 9647841
Alignment:
Q  1 agcagatatgaagaagttgtgttggatgtgtggtaagaagagatgagataagattagaaatg-aaaaattagagatagagttggggtgcagcacatatag 99  Q
    |||||| |||| || |||| ||||||||||||||||||  ||||| ||||||||||||||||  || |||    |||||||||||  |||| || |||||    
T  9647969 agcagagatgaggatgttgcgttggatgtgtggtaagactagatgtgataagattagaaatgtcaacatt----atagagttggg--gcagtacctatag 9647876  T
Q  100 tagaaaagatcgtgaaaaataggtttaggtggttt 134  Q
    |||||| ||| ||| ||| ||| ||||||||||||    
T  9647875 tagaaatgatggtggaaactagctttaggtggttt 9647841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 21834481 - 21834531
Alignment:
Q  11 aagaagttgtgttggatgtgtggtaagaagagatgagataagattagaaat 61  Q
    |||| |||| ||||||||||||||||||  |||||||||||||||||||||    
T  21834481 aagatgttgagttggatgtgtggtaagactagatgagataagattagaaat 21834531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 162
Target Start/End: Original strand, 11412706 - 11412799
Alignment:
Q  67 attagagatagagttggggtgcagcacatatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagatt 162  Q
    |||||||| |||||||||||  ||||| |||||||||||| || ||| |||||||| |||||| |||| ||  | |||||| ||||| ||||||||    
T  11412706 attagagagagagttggggt--agcacctatagtagaaaatatggtggaaaataggcttaggttgtttgggcatttagagataagaactgtagatt 11412799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 176
Target Start/End: Complemental strand, 13241011 - 13240935
Alignment:
Q  100 tagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagattttatagtaatgaga 176  Q
    |||||||||| ||| ||| |||| ||||||||||| ||  ||||||||||||| ||||||||| | |||||| ||||    
T  13241011 tagaaaagatggtggaaactaggcttaggtggtttgggcatgtagagagaagacatgtagattctttagtaaggaga 13240935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 169
Target Start/End: Original strand, 7825291 - 7825445
Alignment:
Q  16 gttgtgttggatgtgtggtaagaagagatgagataagattagaaatgaaaa-attagagatagagttggggtgcagcacatatagtagaaaagatcgtga 114  Q
    |||| ||||||||||||||||||  |||   |||| |||||||||||| |  |||||||| |||||   || | ||||| |||||| | ||| || ||||    
T  7825291 gttgcgttggatgtgtggtaagactagactggatatgattagaaatgacactattagagagagagtgttggagtagcacctatagttgtaaatatggtga 7825390  T
Q  115 aaaataggtttaggtggttttggtgtgtagagagaagaaatgtagattttatagt 169  Q
    |||||| | |||| ||||||  |  ||||||||||||| ||||||||| ||||||    
T  7825391 aaaataagcttagttggtttgagcatgtagagagaagacatgtagattctatagt 7825445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 36039141 - 36039223
Alignment:
Q  1 agcagatatgaagaagttgtgttggatgtgtggtaagaagagatgagataagattagaaatga-aaaattagagatagagttg 82  Q
    |||||| ||||||| |||||||||||||||||| |||   ||||||| ||| |||| |||||| || |||||||| |||||||    
T  36039141 agcagagatgaagatgttgtgttggatgtgtggcaagtttagatgagttaaaattataaatgacaacattagagaaagagttg 36039223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 38434890 - 38435029
Alignment:
Q  22 ttggatgtgtggtaagaagagatgagataagattagaaatga-aaaattagagatagagttggggtgcagcacatatagtagaaaagatcgtgaaaaata 120  Q
    ||||||| ||||||| |  ||| |||| |||||||||||||| || |||||||| ||| |||||||  ||||| ||||||||||||||| ||| ||| ||    
T  38434890 ttggatgcgtggtaaaactagacgagagaagattagaaatgacaacattagagagagaattggggt--agcacctatagtagaaaagatggtggaaacta 38434987  T
Q  121 g-gtttaggtggttttggtgtgtagagagaagaaatgtagat 161  Q
    |  ||| |||||||| ||  |||| ||||||||  |||||||    
T  38434988 gactttgggtggtttgggcatgtaaagagaagacttgtagat 38435029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 8180698 - 8180848
Alignment:
Q  1 agcagatatgaagaagttgtgttggatgtgtggtaagaagagatgagataagattagaaatga-aaaattagagatagagttggggtgcagcacatatag 99  Q
    |||||| |||| || ||||||||||||| |||||||||  |||   |||| |||||| ||||| |  |||||||| ||||| |||||  ||||| |||||    
T  8180698 agcagagatgaggatgttgtgttggatgagtggtaagactagacatgataggattaggaatgacaccattagagagagagtgggggt--agcacctatag 8180795  T
Q  100 tagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaaga 152  Q
    |||||||| | ||  |||||| | |||| |||||| ||  |||||||||||||    
T  8180796 tagaaaagttggtagaaaataagcttagatggtttgggcatgtagagagaaga 8180848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 18958912 - 18958957
Alignment:
Q  89 agcacatatagtagaaaagatcgtgaaaaataggtttaggtggttt 134  Q
    ||||| ||||||||||||||| ||| |||||||| |||||||||||    
T  18958912 agcacctatagtagaaaagatggtggaaaataggcttaggtggttt 18958957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 9579055 - 9578917
Alignment:
Q  11 aagaagttgtgttggatgtgtggtaagaagagatgagataagattagaaatgaaaaa-ttagagatagagttggggtgcagcacatatagtagaaaagat 109  Q
    |||| |||| ||||||||||||||||||| ||||  ||||  |||| |||||| ||  |||||||  |||||||||||   |||||||||||| ||||||    
T  9579055 aagatgttgcgttggatgtgtggtaagaatagatatgatagaattaaaaatgacaatgttagaga--gagttggggtga--cacatatagtagtaaagat 9578960  T
Q  110 cgtgaaaaataggtttaggtggttttggtgtgtagagagaaga 152  Q
      || |||||||  ||||||||||| |   |||||||||||||    
T  9578959 gatgtaaaatagacttaggtggtttggacatgtagagagaaga 9578917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 176
Target Start/End: Original strand, 12141539 - 12141636
Alignment:
Q  77 gagttggggtgcagcacatatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagattttatagtaatgaga 176  Q
    ||||||||||  ||||| ||||||||||||||| ||| |||| ||| ||||||||||| ||   ||||| ||||||  |||||||| | |||||| ||||    
T  12141539 gagttggggt--agcacctatagtagaaaagatggtggaaaagaggcttaggtggtttgggcacgtagaaagaagacctgtagattctctagtaaggaga 12141636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 6888931 - 6889061
Alignment:
Q  21 gttggatgtgtggtaagaagagatgagataagattagaaatga-aaaattagagatagagttggggtgcagcacatatagtagaaaagatcgtgaaaaat 119  Q
    ||||||||||||||||||  |||||||||| |||||||||||| || |||| ||| |||||||||||  ||||| |||||  |||||||| ||| |||||    
T  6888931 gttggatgtgtggtaagactagatgagatatgattagaaatgacaatattacagaaagagttggggt--agcacgtatagaggaaaagatggtggaaaat 6889028  T
Q  120 aggtttaggtggttttggtgtgtagagagaaga 152  Q
    ||| ||| ||||||| |   |||||||||||||    
T  6889029 aggcttaagtggtttggacatgtagagagaaga 6889061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 15986988 - 15986927
Alignment:
Q  115 aaaataggtttaggtggttttggtgtgtagagagaagaaatgtagattttatagtaatgaga 176  Q
    |||||||||||||||||||| || |||||||||||||| ||||||||| |||||||| ||||    
T  15986988 aaaataggtttaggtggtttgggcgtgtagagagaagatatgtagattctatagtaaggaga 15986927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 7359530 - 7359450
Alignment:
Q  95 tatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagattttatagtaatgaga 176  Q
    |||||||||||| || ||| ||||||||||||||||| |||||  ||||||||||||| ||||||||| | |||||| ||||    
T  7359530 tatagtagaaaatatggtggaaaataggtttaggtgg-tttggcatgtagagagaagatatgtagattctgtagtaaggaga 7359450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 14667687 - 14667813
Alignment:
Q  13 gaagttgtgttggatgtgtggtaagaagagatgagataagattagaaatgaaaa-attagagatagag------ttggggtgcagcacatatagtagaaa 105  Q
    |||||||||||||||||||| |||||  ||||||| ||  ||||||||||| || |||||||| ||||      |||||||  ||||| |||||||||||    
T  14667687 gaagttgtgttggatgtgtgataagactagatgaggtagaattagaaatgacaatattagagagagagagagagttggggt--agcacctatagtagaaa 14667784  T
Q  106 agatcgtgaaaaataggtttaggtggttt 134  Q
    |||| ||| |||||||  |||||||||||    
T  14667785 agatggtggaaaatagacttaggtggttt 14667813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 20077166 - 20077116
Alignment:
Q  16 gttgtgttggatgtgtggtaagaagagatgagataagattagaaatgaaaa 66  Q
    ||||||||||||||||||||| |  ||||||||| ||||||||||||||||    
T  20077166 gttgtgttggatgtgtggtaacattagatgagatgagattagaaatgaaaa 20077116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 16134528 - 16134481
Alignment:
Q  16 gttgtgttggatgtgtggtaagaagagatgagataagattagaaatga 63  Q
    |||||||||||||| ||||||||  ||||||||||| |||||||||||    
T  16134528 gttgtgttggatgtatggtaagactagatgagataaaattagaaatga 16134481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 176
Target Start/End: Original strand, 42199299 - 42199378
Alignment:
Q  97 tagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagattttatagtaatgaga 176  Q
    ||||||||||||| ||| ||| |||  ||||||||||| ||  ||||||||||||| ||||||||| | |||||| ||||    
T  42199299 tagtagaaaagatggtggaaactagacttaggtggtttgggcatgtagagagaagacatgtagattctgtagtaaggaga 42199378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 43475245 - 43475332
Alignment:
Q  89 agcacatatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagattttatagtaatgaga 176  Q
    ||||| ||||||||||||||| ||| ||| |||| ||||||||||| ||| |  ||||||||||  ||||||| || |||||| ||||    
T  43475245 agcacctatagtagaaaagatggtggaaactaggcttaggtggtttgggtattcagagagaagacctgtagatgttgtagtaaggaga 43475332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 388
Target Start/End: Original strand, 37202021 - 37202087
Alignment:
Q  322 gaactccgtagtcaatcattgtattcttgtgcgtttatttatctgttcactttagaattgggtttgc 388  Q
    |||||| ||| |||||| |||| ||||||||||||||||||| || | |||||||| | ||||||||    
T  37202021 gaactctgtaatcaatctttgtgttcttgtgcgtttatttatttgattactttagagtcgggtttgc 37202087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 14749267 - 14749329
Alignment:
Q  43 atgagataagattagaaatgaaaa-attagagatagagttggggtgcagcacatatagtagaaaa 106  Q
    |||||||| ||||||||||||||| |||||||| ||||||  |||| ||||| ||||||||||||    
T  14749267 atgagataggattagaaatgaaaacattagagagagagtt--ggtgtagcacctatagtagaaaa 14749329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 28676606 - 28676663
Alignment:
Q  95 tatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaaga 152  Q
    ||||||||||||||| ||| |||||||  ||||||||||| ||  |||||||||||||    
T  28676606 tatagtagaaaagatggtggaaaatagtcttaggtggtttcggcatgtagagagaaga 28676663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 14100253 - 14100321
Alignment:
Q  17 ttgtgttggatgtgtggtaagaagagatgagataagattagaaatga-aaaattagagatagagttggg 84  Q
    ||||||||||||||| ||||||  |||||| ||| |||||||||||| || |||| ||| |||||||||    
T  14100253 ttgtgttggatgtgtcgtaagagaagatgatatatgattagaaatgacaacattaaagaaagagttggg 14100321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 33709837 - 33710016
Alignment:
Q  1 agcagatatgaagaagttgtgttggatgtgtggtaaga--agagatga---gataagattagaaatgaaaa-attagagatagagttggggtgcagcaca 94  Q
    |||||| |||| || |||| ||||||||||||||||||  ||| ||||   |||| |||||||||||  || |||||||| |||||||||||  | |||     
T  33709837 agcagagatgatgatgttgcgttggatgtgtggtaagactagacatgataggataggattagaaatggcaacattagagagagagttggggt--aacacc 33709934  T
Q  95 tatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagattttatagtaatgaga 176  Q
    ||||||||||||||| ||| ||| |||||||||||||||| ||  ||| |||||||||| ||| |||| | |||||| ||||    
T  33709935 tatagtagaaaagatggtggaaactaggtttaggtggtttaggcatgtggagagaagaactgtggattctgtagtaaagaga 33710016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 176
Target Start/End: Original strand, 54470146 - 54470299
Alignment:
Q  22 ttggatgtgtggtaagaagagatgagataagattagaaatgaaaa-attagagatagagttggggtgcagcacatatagtagaaaagatcgtgaaaaata 120  Q
    |||||||||||||||||  ||||| |||| |||| ||||| | || |||||||| |||||||||||  ||||| ||||||||||||||| ||| ||| ||    
T  54470146 ttggatgtgtggtaagactagatgggatatgatttgaaataacaacattagagagagagttggggt--agcacctatagtagaaaagatggtggaaacta 54470243  T
Q  121 ggtttaggtggttttggtgtgtagagagaagaaatgtagattttatagtaatgaga 176  Q
    |  ||| ||||||| ||  ||||||||||||| ||||| ||| | |||||| ||||    
T  54470244 gacttaagtggtttgggcatgtagagagaagacatgtaaattatgtagtaaggaga 54470299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 67 - 164
Target Start/End: Complemental strand, 30621501 - 30621406
Alignment:
Q  67 attagagatagagttggggtgcagcacatatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagatttt 164  Q
    ||||||||  ||||||||||  ||||| ||||||||||||||| ||| |||||||||||||||| ||| ||   ||||||||||||  ||||||||||    
T  30621501 attagagagggagttggggt--agcacttatagtagaaaagatggtggaaaataggtttaggtgatttgggcacgtagagagaagatttgtagatttt 30621406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 17900398 - 17900504
Alignment:
Q  1 agcagatatgaagaagttgtgttggatgtgtggtaagaagagatgagataagattagaaatga-aaaattagagatagagttggggtgcagcacatatag 99  Q
    |||||| |||| || |||| ||||||||||||||||||  ||||| ||||| |||||||||||  | ||||||||  ||||||||||  ||||| |||||    
T  17900398 agcagaaatgaggatgttgcgttggatgtgtggtaagactagatgggataaaattagaaatgacgacattagagacggagttggggt--agcacctatag 17900495  T
Q  100 tagaaaaga 108  Q
    |||||||||    
T  17900496 tagaaaaga 17900504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 50662322 - 50662480
Alignment:
Q  16 gttgtgttggatgtgtggtaagaagagatgagataagattagaaatgaaaa-attagagatagagttggggtgcagcacatatagtagaaaagatcgtga 114  Q
    ||||||| |||||||||||||||  | |||||||| |||| ||||||| |  ||||||||  ||||| |||  || ||| ||||||||||||||| |||     
T  50662322 gttgtgtaggatgtgtggtaagactatatgagataggattggaaatgacagcattagaga--gagtttggg--caacacctatagtagaaaagatggtgg 50662417  T
Q  115 aaaataggtttaggtggtttt-ggtgtgtagagagaagaaatgtagattttatagtaatgaga 176  Q
    ||| |||| |||||||||||| ||  |||||||||||||  |||||||| ||| |||| ||||    
T  50662418 aaagtaggcttaggtggttttgggcatgtagagagaagacttgtagattctattgtaaggaga 50662480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 162
Target Start/End: Complemental strand, 51252807 - 51252665
Alignment:
Q  17 ttgtgttggatgtgtggtaagaagagatgagataagattagaaatgaaaa-attagagatagagttggggtgcagcacatatagtagaaaagatcgtgaa 115  Q
    ||||||| ||||||| ||||||  ||| |||||| ||||||||||||  | ||||||||  ||||||||||  ||||| | ||||||||||||| ||| |    
T  51252807 ttgtgttagatgtgtcgtaagactagacgagataggattagaaatgactacattagaga--gagttggggt--agcacctctagtagaaaagatggtgga 51252712  T
Q  116 aaataggtttaggtggttttggtgtgtagagagaagaaatgtagatt 162  Q
    || |||| ||||||||| | ||  ||||||||||||| |||| ||||    
T  51252711 aactaggcttaggtggtatgggcatgtagagagaagacatgtggatt 51252665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 27991779 - 27991730
Alignment:
Q  1 agcagatatgaagaagttgtgttggatgtgtggtaagaagagatgagata 50  Q
    |||||| ||||||| |||||||||||||||||||||||  ||||||||||    
T  27991779 agcagaaatgaagatgttgtgttggatgtgtggtaagattagatgagata 27991730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 44860772 - 44860833
Alignment:
Q  1 agcagatatgaagaagttgtgttggatgtgtggtaagaagagatgagataagattagaaatg 62  Q
    |||||| |||| || |||||||||||||||||||||||  |||||  |||||||||||||||    
T  44860772 agcagaaatgaggatgttgtgttggatgtgtggtaagactagatggaataagattagaaatg 44860833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 55768778 - 55768733
Alignment:
Q  89 agcacatatagtagaaaagatcgtgaaaaataggtttaggtggttt 134  Q
    ||||| |||||||||||||||| || ||||||||||||||||||||    
T  55768778 agcacctatagtagaaaagatcatggaaaataggtttaggtggttt 55768733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 55833034 - 55832989
Alignment:
Q  89 agcacatatagtagaaaagatcgtgaaaaataggtttaggtggttt 134  Q
    ||||| |||||||||||||||| || ||||||||||||||||||||    
T  55833034 agcacctatagtagaaaagatcatggaaaataggtttaggtggttt 55832989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 176
Target Start/End: Original strand, 28497478 - 28497581
Alignment:
Q  70 agagatagagttggggtgcagcacatatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagattttatagt 169  Q
    ||||| |||||||||||  ||||| | ||||||||||||| ||| |||| ||| ||||||||||| ||  |||||||||||||  |||||||| | ||||    
T  28497478 agagagagagttggggt--agcacctttagtagaaaagattgtggaaaa-aggcttaggtggtttgggcatgtagagagaagacttgtagattatgtagt 28497574  T
Q  170 aatgaga 176  Q
    || ||||    
T  28497575 aaggaga 28497581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 170
Target Start/End: Complemental strand, 7092497 - 7092416
Alignment:
Q  89 agcacatatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagattttatagta 170  Q
    ||||| |||||||||||| ||  |  |||||||||||| ||||||| ||  | ||||||||||| |||||||| ||||||||    
T  7092497 agcacctatagtagaaaatatgatagaaaataggtttaagtggtttgggcatatagagagaagacatgtagatgttatagta 7092416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 31960178 - 31960028
Alignment:
Q  1 agcagatatgaagaagttgtgttggatgtgtggtaagaagagatgagataagattagaaatgaaaa-attagagatagagttggggtgcagcacatatag 99  Q
    |||||| |||| || |||| |||||||| |||||||||  |||   |||| |||||| ||||| |  |||||||| ||||| |||||  ||||| |||||    
T  31960178 agcagagatgaggatgttgcgttggatgagtggtaagactagacaggataggattaggaatgacaccattagagagagagtgggggt--agcacctatag 31960081  T
Q  100 tagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaaga 152  Q
    |||||||| | ||  |||||||| |||| |||||| ||  |||||||||||||    
T  31960080 tagaaaagttggtagaaaataggcttagatggtttgggcatgtagagagaaga 31960028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 56375208 - 56375358
Alignment:
Q  1 agcagatatgaagaagttgtgttggatgtgtggtaagaagagatgagataagattagaaatga-aaaattagagatagagttggggtgcagcacatatag 99  Q
    |||||| |||| || |||| |||||||| |||||||||  |||  |||||||||||| ||||| |  |||||||| ||||| |||||  ||||| ||||     
T  56375208 agcagagatgaggatgttgcgttggatgagtggtaagactagacaagataagattaggaatgacaccattagagagagagtaggggt--agcacctataa 56375305  T
Q  100 tagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaaga 152  Q
    |||||||| | ||  |||| ||| |||| |||||| ||  |||||||||||||    
T  56375306 tagaaaagttggtagaaaacaggcttagatggtttgggcatgtagagagaaga 56375358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 28236188 - 28236260
Alignment:
Q  89 agcacatatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagat 161  Q
    ||||| ||||||||||||| | ||| |||||||| |||| |||||| ||  |||||||||||||  |||||||    
T  28236188 agcacctatagtagaaaagttggtggaaaataggcttagatggtttgggcatgtagagagaagacttgtagat 28236260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 34233382 - 34233318
Alignment:
Q  16 gttgtgttggatgtgtggtaagaagagatgagataagattagaaatga-aaaattagagatagag 79  Q
    ||||||||||||||||| |||||  ||||| |||| ||||||||| || || |||||||||||||    
T  34233382 gttgtgttggatgtgtgataagactagatgtgataggattagaaacgacaacattagagatagag 34233318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 50471538 - 50471594
Alignment:
Q  96 atagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaaga 152  Q
    |||||||||||||| ||| ||| |||||||| ||||||| ||  |||||||||||||    
T  50471538 atagtagaaaagatggtggaaactaggtttaagtggtttgggcatgtagagagaaga 50471594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 9509236 - 9509386
Alignment:
Q  1 agcagatatgaagaagttgtgttggatgtgtggtaagaagagatgagataagattagaaatgaaaa-attagagatagagttggggtgcagcacatatag 99  Q
    |||||| |||| || ||||||||||||| ||| |||||  |||   |||| |||||||||||| |  |||||||| |||||||||||  ||||| |||||    
T  9509236 agcagagatgaggatgttgtgttggatgagtgataagactagacaggatatgattagaaatgacaccattagagagagagttggggt--agcacctatag 9509333  T
Q  100 tagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaaga 152  Q
    |||||||||| || ||||||||| |||||| |||| ||  |||||||||||||    
T  9509334 tagaaaagatggtaaaaaataggcttaggtagtttgggcatgtagagagaaga 9509386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 95 - 186
Target Start/End: Complemental strand, 48431677 - 48431586
Alignment:
Q  95 tatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagattttatagtaatgagaaatgatcaga 186  Q
    ||||||||||||||| ||| |||||||| ||||||||||| ||  |||||||||||||  |||||||||| |||||| ||||  ||||||||    
T  48431677 tatagtagaaaagatggtggaaaataggcttaggtggtttgggcatgtagagagaagacttgtagattttgtagtaaagagagttgatcaga 48431586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 152
Target Start/End: Complemental strand, 35828868 - 35828764
Alignment:
Q  47 gataagattagaaatgaaaa-attagagatagagttggggtgcagcacatatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtaga 145  Q
    ||||||||||||||||| || |||||||| |||||| | ||  ||||| ||| ||||||||||| ||| |||||||| ||||||||||| |  |||||||    
T  35828868 gataagattagaaatgacaatattagagagagagtttgagt--agcacctatggtagaaaagatggtggaaaatagggttaggtggtttggacgtgtaga 35828771  T
Q  146 gagaaga 152  Q
    |||||||    
T  35828770 gagaaga 35828764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 40416376 - 40416463
Alignment:
Q  89 agcacatatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagattttatagtaatgaga 176  Q
    ||||| ||||||||||||||| ||| |||  ||| ||||||||||| ||  |||||||||||||| |||||||||| |||||| ||||    
T  40416376 agcacctatagtagaaaagatggtggaaacgaggcttaggtggtttaggcatgtagagagaagaactgtagattttgtagtaaggaga 40416463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 52442868 - 52442782
Alignment:
Q  1 agcagatatgaagaagttgtgttggatgtgtggtaagaagagatgagataagattagaaatga-aaaattagagatagagttggggt 86  Q
    |||||| |||| || |||||||||||||||||||||||  |||  |||||||||||||||||| || ||| |||| |||||||||||    
T  52442868 agcagacatgaggatgttgtgttggatgtgtggtaagactagacaagataagattagaaatgagaacattggagagagagttggggt 52442782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 32404797 - 32404716
Alignment:
Q  95 tatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagattttatagtaatgaga 176  Q
    ||||||| ||||||| ||| |||||||| ||||||||||| | | |||||||||||||  |||||||| |||||||| ||||    
T  32404797 tatagtaaaaaagatggtggaaaataggcttaggtggtttggatatgtagagagaagacctgtagattctatagtaaggaga 32404716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 39140468 - 39140588
Alignment:
Q  31 tggtaagaagagatgagataagattagaaatgaaaa-attagagatagagttggggtgcagcacatatagtagaaaagatcgtgaaaaataggtttaggt 129  Q
    ||||||||  |||||||||| |||||| |||||||  |||| ||| |||||||| ||  ||||| ||||||||||||||| |  |||||| || ||||||    
T  39140468 tggtaagactagatgagataggattaggaatgaaaccattacagagagagttggcgt--agcacctatagtagaaaagatggcaaaaaattggcttaggt 39140565  T
Q  130 ggttttggtgtgtagagagaaga 152  Q
    ||||| ||  |||||||||||||    
T  39140566 ggtttgggcatgtagagagaaga 39140588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 9599758 - 9599627
Alignment:
Q  1 agcagatatgaagaagttgtgttggatgtgtggtaagaagagatgagataagattagaaatgaaaa-attagagatagagttggggtgcagcacatatag 99  Q
    |||||| |||| || ||||||||||||| |||||||||  ||| | |||| |||||| ||||| |  |||||||| |||||||| ||  | ||| |||||    
T  9599758 agcagagatgaggatgttgtgttggatgagtggtaagactagacgggatatgattaggaatgacatcattagagagagagttggagt--aacacctatag 9599661  T
Q  100 tagaaaagatcgtgaaaaataggtttaggtggtt 133  Q
    |||||||||| ||  |||||||| ||||||||||    
T  9599660 tagaaaagatggtagaaaataggcttaggtggtt 9599627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 171
Target Start/End: Original strand, 43423683 - 43423806
Alignment:
Q  47 gataagattagaaatgaaaa-attagagatagagttggggtgcagcacatatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtaga 145  Q
    |||| ||||||||||||  | |||||||| |||||||||||  | ||| ||||||||||||||| ||| ||| |||| ||||||||||| |   ||||||    
T  43423683 gataggattagaaatgaccacattagagagagagttggggt--aacacctatagtagaaaagatggtggaaactaggcttaggtggtttggccatgtaga 43423780  T
Q  146 gagaagaaatgtagattttatagtaa 171  Q
    |||||||  |||||||| | ||||||    
T  43423781 gagaagacttgtagattatgtagtaa 43423806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 29578280 - 29578231
Alignment:
Q  16 gttgtgttggatgtgtggtaagaagagatgagataagattagaaatgaaa 65  Q
    ||||||||||||||||||||| || ||| | |||||||||||||||||||    
T  29578280 gttgtgttggatgtgtggtaataatagaagcgataagattagaaatgaaa 29578231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 176
Target Start/End: Original strand, 2544587 - 2544691
Alignment:
Q  70 agagatagagttggggtgcagcacatatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagattttatagt 169  Q
    ||||| |||||||||||  ||||| ||||||||||||||| ||| |||| ||  ||||||||||| |   |||||||||||||  | |||||| ||||||    
T  2544587 agagagagagttggggt--agcacctatagtagaaaagatggtggaaaacagacttaggtggtttggacatgtagagagaagacctatagattctatagt 2544684  T
Q  170 aatgaga 176  Q
    || ||||    
T  2544685 aaggaga 2544691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 16273169 - 16273122
Alignment:
Q  16 gttgtgttggatgtgtggtaagaagagatgagataagattagaaatga 63  Q
    |||| ||||||||||||||||||  ||||||||| |||||||||||||    
T  16273169 gttgcgttggatgtgtggtaagactagatgagatgagattagaaatga 16273122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 16943109 - 16943252
Alignment:
Q  17 ttgtgttggatgtgtggtaagaagagatgagataagattagaaatga-aaaattagagatagagttggggtgcagcacatatagtagaaaagatcgtgaa 115  Q
    |||||||||||| ||| |||||  ||| ||||||| |||||| || | || ||||| || |||||||||||  || || ||||||||||||||| ||| |    
T  16943109 ttgtgttggatgcgtgataagactagacgagataaaattagacattacaatattagggagagagttggggt--agtacctatagtagaaaagatggtgga 16943206  T
Q  116 aaataggtttaggtggttttggtgtgtagagagaagaaatgtagatt 162  Q
    || ||| |||| ||||||| || |||||| ||||||| || ||||||    
T  16943207 aactagattta-gtggtttgggcgtgtagggagaagacatttagatt 16943252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 36340085 - 36339998
Alignment:
Q  84 ggtgcagcacatatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagattttatagtaa 171  Q
    |||| ||||| |||| |||||||||| ||| |||||||||||||||||||| |   || ||||||||||  | |||||||| ||||||    
T  36340085 ggtgtagcacctatattagaaaagatggtggaaaataggtttaggtggtttagacatggagagagaagacctatagattttgtagtaa 36339998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 171
Target Start/End: Original strand, 51812489 - 51812612
Alignment:
Q  47 gataagattagaaatgaaaaatt-agagatagagttggggtgcagcacatatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtaga 145  Q
    |||||||||||||||||  | || ||||| |||||||||||  | ||  ||||||||||||||| ||| ||| |||| ||| ||| ||| ||  ||||||    
T  51812489 gataagattagaaatgactactttagagagagagttggggt--aacaactatagtagaaaagatggtggaaactaggcttatgtgatttgggcatgtaga 51812586  T
Q  146 gagaagaaatgtagattttatagtaa 171  Q
    ||||| || |||||||||| ||||||    
T  51812587 gagaaaaattgtagattttgtagtaa 51812612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 1210663 - 1210813
Alignment:
Q  1 agcagatatgaagaagttgtgttggatgtgtggtaagaagagatgagataagattagaaatgaaaa-attagagatagagttggggtgcagcacatatag 99  Q
    |||||| |||| || |||| |||||||| |||||||||  |||   |||| |||||| ||||| |  |||||||| ||||| |||||  ||||| |||||    
T  1210663 agcagagatgaggatgttgcgttggatgagtggtaagactagacaggataggattaggaatgacaccattagagagagagtgggggt--agcacctatag 1210760  T
Q  100 tagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaaga 152  Q
    |||||||| | ||  |||||||| |||| |||||| ||  |||||||||||||    
T  1210761 tagaaaagttggtagaaaataggcttagatggtttgggcatgtagagagaaga 1210813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 8391697 - 8391815
Alignment:
Q  8 atgaagaagttgtgttggatgtgtggtaagaagagatgagataagattagaaatga-aaaattagagatagagttggggtgcagcacatatagtagaaaa 106  Q
    ||||||| ||||||||||||| |||||||||  | |  ||||| |||||| ||||| |  |||||||| ||||| |||||  ||||| ||||||||||||    
T  8391697 atgaagatgttgtgttggatgagtggtaagactacacaagataggattaggaatgacaccattagagagagagtgggggt--agcacctatagtagaaaa 8391794  T
Q  107 gatcgtgaaaaataggtttag 127  Q
    | | ||  |||||||||||||    
T  8391795 gttggtagaaaataggtttag 8391815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 4379938 - 4380002
Alignment:
Q  16 gttgtgttggatgtgtggtaagaagagatgagataagattagaaatga-aaaattagagatagag 79  Q
    |||||||||||||||||||||||  |||  ||||| |||||||||||| || |||||||| ||||    
T  4379938 gttgtgttggatgtgtggtaagactagaaaagatatgattagaaatgacaacattagagagagag 4380002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 41611811 - 41611883
Alignment:
Q  89 agcacatatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagat 161  Q
    ||||| |||| |||||||||| ||  |||||||||||| |||||||  |  ||||||||||||| ||||||||    
T  41611811 agcacttatattagaaaagatggtagaaaataggtttatgtggtttgagaatgtagagagaagatatgtagat 41611883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 2079351 - 2079432
Alignment:
Q  95 tatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagattttatagtaatgaga 176  Q
    ||||||||||||||| ||| |||||||| ||| ||||||| ||| |||||||||||||  |||||||| | |||||| ||||    
T  2079351 tatagtagaaaagatggtggaaaataggcttaagtggtttaggtatgtagagagaagatttgtagattatgtagtaaggaga 2079432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 33083996 - 33084126
Alignment:
Q  21 gttggatgtgtggtaagaagagatgagataagattagaaatga-aaaattagagatagagttggggtgcagcacatatagtagaaaagatcgtgaaaaat 119  Q
    ||||||||||||||||||  ||||| ||||  |||||||||||  | |||||||| |||||||||||  ||||| ||| ||||||||||| ||  ||| |    
T  33083996 gttggatgtgtggtaagactagatgggatagaattagaaatgacgatattagagagagagttggggt--agcacctatggtagaaaagatggtagaaact 33084093  T
Q  120 aggtttaggtggttttggtgtgtagagagaaga 152  Q
    ||  ||||||||||| ||  |||||||||||||    
T  33084094 agacttaggtggtttgggaatgtagagagaaga 33084126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 33998368 - 33998285
Alignment:
Q  1 agcagatatgaagaagttgtgttggatgtgtggtaagaagagatgagataagattagaaatga-aaaattagagatagagttgg 83  Q
    |||||| ||||||| |||| ||||||||||||||||||  ||||| |||| ||||||||||||  | |||||||| ||||||||    
T  33998368 agcagagatgaagatgttgcgttggatgtgtggtaagactagatgtgataggattagaaatgactacattagagagagagttgg 33998285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 7513338 - 7513285
Alignment:
Q  10 gaagaagttgtgttggatgtgtggtaagaagagatgagataagattagaaatga 63  Q
    ||||| |||| ||||||||||||||||||  ||||||||||||||| |||||||    
T  7513338 gaagatgttgcgttggatgtgtggtaagactagatgagataagatttgaaatga 7513285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 9593975 - 9593911
Alignment:
Q  97 tagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagat 161  Q
    ||||||||||||| ||  |||||||| ||||||||||| ||  ||||||||||||| ||||||||    
T  9593975 tagtagaaaagatggtagaaaataggcttaggtggtttgggcatgtagagagaagacatgtagat 9593911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 9749491 - 9749419
Alignment:
Q  99 gtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaagaaatgtagattttatagtaa 171  Q
    ||||||||||  ||| ||| | |||||||||||||| ||  ||||||||||||  ||||||||||||||||||    
T  9749491 gtagaaaagaaggtggaaacttggtttaggtggtttagggatgtagagagaagtcatgtagattttatagtaa 9749419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 6641758 - 6641666
Alignment:
Q  16 gttgtgttggatgtgtggtaagaagagatgagataagattagaaatgaaaa-attagagatagagttggggtgcagcacatatagtagaaaagat 109  Q
    |||| ||| ||||| | ||||||  ||||| ||||||||| ||||||| || ||||||||||||||||||||  | ||| |||||||||||||||    
T  6641758 gttgcgttcgatgttttgtaagactagatgggataagattggaaatgacaatattagagatagagttggggt--atcacctatagtagaaaagat 6641666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 380
Target Start/End: Complemental strand, 15521970 - 15521925
Alignment:
Q  335 aatcattgtattcttgtgcgtttatttatctgttcactttagaatt 380  Q
    ||||||||| ||||||||||||||||||||| |  |||||||||||    
T  15521970 aatcattgtgttcttgtgcgtttatttatctatcaactttagaatt 15521925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 12134250 - 12134145
Alignment:
Q  16 gttgtgttggatgtgtggtaagaagagatgagataagattagaaatga-aaaattagagatagagttggggtgcagcacatatagtagaaaagatcgtga 114  Q
    |||||||||||||||||| ||||  |||||| |||  ||||||||||| || |||||||| ||| ||| |||  |  || ||||||||||||||| |||     
T  12134250 gttgtgttggatgtgtggcaagacaagatgatatagaattagaaatgacaatattagagagagaattgaggt--acgacctatagtagaaaagatggtgg 12134153  T
Q  115 aaaatagg 122  Q
    ||||||||    
T  12134152 aaaatagg 12134145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 76 - 152
Target Start/End: Complemental strand, 44156 - 44082
Alignment:
Q  76 agagttggggtgcagcacatatagtagaaaagatcgtgaaaaataggtttaggtggttttggtgtgtagagagaaga 152  Q
    |||||||||||  ||||| ||||||||||||||| | | |||||||| ||||||||||| ||  |||||||||||||    
T  44156 agagttggggt--agcacctatagtagaaaagatggcggaaaataggcttaggtggtttgggcatgtagagagaaga 44082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 31401 - 31536
Alignment:
Q  16 gttgtgttggatgtgtggtaagaagagatgagataagattagaaatgaaaa-attagagatagagttggggtgcagcacatatagtagaaaagatcgtga 114  Q
    |||| |||||||| |||||||||  |||   ||||||||||| ||||| |  |||||||| ||||| |||||  ||||| ||||||||||||| | ||      
T  31401 gttgcgttggatgagtggtaagactagacaggataagattaggaatgacaccattagagagagagtgggggt--agcacctatagtagaaaagttggtag 31498  T
Q  115 aaaataggtttaggtggttttggtgtgtagagagaaga 152  Q
    |||||||| |||| |||||| ||  |||||||||||||    
T  31499 aaaataggcttagatggtttgggcatgtagagagaaga 31536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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