View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5729_low_8 (Length: 354)
Name: NF5729_low_8
Description: NF5729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5729_low_8 |
 | |
|
| [»] chr3 (12 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 354
Target Start/End: Original strand, 5455052 - 5455388
Alignment:
| Q |
18 |
tgttgtgaaaccaaagtatgcagccactcccaccatctctgatatctaaagttgcatatgcattgcaagtacagtttttcaaacacattgtcttacattc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5455052 |
tgttgtgaaaccaaagtatgcagccactcccatcatctctgatatctaaagttgcatatgcattgcaagtacagtttttcaaacacattgtcttacattc |
5455151 |
T |
|
| Q |
118 |
ctcaaggcttaaggttttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtacggtaaaaatccatctacatggagacaatttcaatgt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
5455152 |
ctcaaggcttaaggttttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtacggtaaaaatccatctccatggagacaatttaaatgt |
5455251 |
T |
|
| Q |
218 |
gttttccttacacacccaccagaccaatctgatgactcccactttggttgaaattttggcatgaaaccttccaaacattcacatattggaaagtcattaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5455252 |
gttttccttacacacccaccagaccaatctgatgactcccactttggttgaaattttggcatgaaaccttccaaacattcacatattggaaagtcattaa |
5455351 |
T |
|
| Q |
318 |
tattgcagttagaattgataccacaaaaggcataagc |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5455352 |
tattgcagttagaattgataccacaaaaggcataagc |
5455388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 25 - 354
Target Start/End: Original strand, 5446500 - 5446826
Alignment:
| Q |
25 |
aaaccaaagtatgcagccactcccaccatctctgatatctaaagttgcatatgcattgcaagtacagtttttcaaacacattgtcttacattcctcaagg |
124 |
Q |
| |
|
|||||| |||| ||||||||| ||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5446500 |
aaaccagagtaagcagccact---accatatctgatatctaaagttgcatatgcagaacaagaacagtttttcaaacacattgtcttacattcctcaagg |
5446596 |
T |
|
| Q |
125 |
cttaaggttttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtacggtaaaaatccatctacatggagacaatttcaatgtgttttcc |
224 |
Q |
| |
|
|| ||| | |||| | |||| |||| ||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
5446597 |
ctcaagatcttgttataccatgatgatgatgtatctggtaacttcatgtttgtgtacggtaaaaatccatctccatggagacaatttaaatgtgttttcc |
5446696 |
T |
|
| Q |
225 |
ttacacacccaccagaccaatctgatgactcccactttggttgaaattttggcatgaaaccttccaaacattcacatattggaaagtcattaatattgca |
324 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
5446697 |
ttacgcacccaccagaccaatctgatgcctcccacttcagttgaaattttggcctgaaaccttccaaacatacacatattggaaagtcattcatattgca |
5446796 |
T |
|
| Q |
325 |
gttagaattgataccacaaaaggcataagc |
354 |
Q |
| |
|
||||||||||||||||||||||| |||||| |
|
|
| T |
5446797 |
gttagaattgataccacaaaaggtataagc |
5446826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 5854228 - 5853894
Alignment:
| Q |
18 |
tgttgtgaaaccaaagtatgcagccactcccaccatctctgatatctaaagttgcatatgcattgcaagtacagtttttcaaacacattgtcttacattc |
117 |
Q |
| |
|
|||||| ||||||||||| ||||||||| ||| ||| ||||||||||||| ||||||||||| |||||| ||||||||||||||||| |||| ||||||| |
|
|
| T |
5854228 |
tgttgtcaaaccaaagtaagcagccacttccaacatatctgatatctaaatttgcatatgcagtgcaagaacagtttttcaaacacactgtcatacattc |
5854129 |
T |
|
| Q |
118 |
ctcaaggcttaaggttttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtacggtaaaaatccatctacatggagacaatttcaatgt |
217 |
Q |
| |
|
||||||||| ||| | ||||||||||||||||||||||| ||||| ||||||||||||| ||| |||||||| |||||| ||| || ||||||| || | |
|
|
| T |
5854128 |
ctcaaggctcaagctcttgtcaaaccacgatgctgacgtgtctggtaacttcatgtttgcgtatggtaaaaacccatctccatagacacaatttaaactt |
5854029 |
T |
|
| Q |
218 |
gttttccttacacacccaccagaccaatctgatgactcccactttggttgaaattttggcatgaaaccttccaaacattcacatattggaaagtcattaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||| |||| |
|
|
| T |
5854028 |
gttttccttacacacccaccagaccaatttgatgactcccactctggttgaaattttggcatgaaaccttccaagcattcacatgttggaaagttattac |
5853929 |
T |
|
| Q |
318 |
tattgcagttagaattgataccacaaaaggcataa |
352 |
Q |
| |
|
||||||||||||| |||||||| || ||||||||| |
|
|
| T |
5853928 |
tattgcagttagagttgataccgcacaaggcataa |
5853894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 354
Target Start/End: Original strand, 5503042 - 5503378
Alignment:
| Q |
18 |
tgttgtgaaaccaaagtatgcagccactcccaccatctctgatatctaaagttgcatatgcattgcaagtacagtttttcaaacacattgtcttacattc |
117 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||||||||||| || ||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5503042 |
tgttgtcaaaccaaagtaagcagccactcccaccatctctgatatctgaatttgcatatgcagtgcaagaacagtttttcaaacacattgtcttacattc |
5503141 |
T |
|
| Q |
118 |
ctcaaggcttaaggttttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtacggtaaaaatccatctacatggagacaatttcaatgt |
217 |
Q |
| |
|
||||||||| ||| | ||||| |||| |||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| || || |
|
|
| T |
5503142 |
ctcaaggctcaagctcctgtcataccaagatgttgacgtgtctggcaacttcatgtttgtgtacggtaaaaatccatcgccatggagacaatttaaacgt |
5503241 |
T |
|
| Q |
218 |
gttttccttacacacccaccagaccaatctgatgactcccactttggttgaaattttggcatgaaaccttccaaacattcacatattggaaagtcattaa |
317 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||| ||||||| ||||||||| ||||||||| || |||||||||||||||||| || | |
|
|
| T |
5503242 |
gttttccttatgcacccaccagaccaatttgatgactcccactctggttgagattttggcacgaaaccttctaagcattcacatattggaaagatatcac |
5503341 |
T |
|
| Q |
318 |
tattgcagttagaattgataccacaaaaggcataagc |
354 |
Q |
| |
|
|||||||||||||||| ||||||| ||| ||||||| |
|
|
| T |
5503342 |
cattgcagttagaattgttaccacacaagtcataagc |
5503378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 354
Target Start/End: Original strand, 5490229 - 5490565
Alignment:
| Q |
18 |
tgttgtgaaaccaaagtatgcagccactcccaccatctctgatatctaaagttgcatatgcattgcaagtacagtttttcaaacacattgtcttacattc |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5490229 |
tgttgttaaaccaaagtatgcagccactcccaccatctttgatatctgaatttgcatatgcagtgcaagtacagtttttcaaacacattgtcttacattc |
5490328 |
T |
|
| Q |
118 |
ctcaaggcttaaggttttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtacggtaaaaatccatctacatggagacaatttcaatgt |
217 |
Q |
| |
|
||||||||| ||| | |||| | | |||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || || |
|
|
| T |
5490329 |
ctcaaggctcaagctcttgttataatacgatgatgatgtatctggcaacttcatgtttgtgtacggtaaaaatccatcgccatggagacaatttaaacgt |
5490428 |
T |
|
| Q |
218 |
gttttccttacacacccaccagaccaatctgatgactcccactttggttgaaattttggcatgaaaccttccaaacattcacatattggaaagtcattaa |
317 |
Q |
| |
|
||||| |||| ||| ||||||||||||| |||||| ||||||| | ||||||||||||||||||||||||| || |||||||||||||||||| || | |
|
|
| T |
5490429 |
gtttttcttagacatccaccagaccaatttgatgaatcccactctagttgaaattttggcatgaaaccttctaagcattcacatattggaaagatatcac |
5490528 |
T |
|
| Q |
318 |
tattgcagttagaattgataccacaaaaggcataagc |
354 |
Q |
| |
|
|||||||||||||||| ||||||| ||| ||||||| |
|
|
| T |
5490529 |
cattgcagttagaattgttaccacacaagtcataagc |
5490565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 5525879 - 5526207
Alignment:
| Q |
18 |
tgttgtgaaaccaaagtatgcagccactcccaccatctctgatatctaaagttgcatatgcattgcaagtacagtttttcaaacacattgtcttacattc |
117 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||| |||| || ||||||||||| |||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
5525879 |
tgttgttaaaccaaagtaagcagccactcccaccatctctgacatctgaatttgcatatgcagtgcaagaacaatttttcaaacacattgtcttacattc |
5525978 |
T |
|
| Q |
118 |
ctcaaggcttaaggttttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtacggtaaaaatccatctaca---tggagacaatttcaa |
214 |
Q |
| |
|
||| ||||| ||| | |||||| |||| |||| |||||| |||||||||||||||||||||||||||||||||||||| || | |||||||||| || |
|
|
| T |
5525979 |
ctcgaggctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgtttgtgtacggtaaaaatccatccccatcgtcgagacaatttaaa |
5526078 |
T |
|
| Q |
215 |
tgtgttttccttacacacccaccagaccaatctgatgactcccactttggttgaaattttggcatgaaaccttccaaacattcacatattggaaagtcat |
314 |
Q |
| |
|
||||||||||||||||||||| || ||||| ||| ||| ||||| |||||||||||||||||||||||||||||| |||| ||||||||||||| || |
|
|
| T |
5526079 |
ggtgttttccttacacacccactagcccaatttgacaactgccactctggttgaaattttggcatgaaaccttccaagcatttacatattggaaagatat |
5526178 |
T |
|
| Q |
315 |
taatattgcagttagaattgataccacaa |
343 |
Q |
| |
|
|| |||||| |||||||||||||||||| |
|
|
| T |
5526179 |
caacattgcaattagaattgataccacaa |
5526207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 5848927 - 5848593
Alignment:
| Q |
18 |
tgttgtgaaaccaaagtatgcagccactcccaccatctctgatatctaaagttgcatatgcattgcaagtacagtttttcaaacacattgtcttacattc |
117 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
5848927 |
tgttgttaaaccaaagtaagcagccactcccaccatctctgatatctaaatttgcatatgcagtgcaagtacagtttttcaagcacagtgtcttacattc |
5848828 |
T |
|
| Q |
118 |
ctcaaggcttaaggttttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtacggtaaaaatccatctacatggagacaatttcaatgt |
217 |
Q |
| |
|
||||||||| ||| | |||||| |||| |||| |||||| ||||||||||||||| |||||||| | ||| ||||| || | ||||||| | | | |
|
|
| T |
5848827 |
ctcaaggctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtacttcagaaagccatccccagtgtgacaattcaatttt |
5848728 |
T |
|
| Q |
218 |
gttttccttacacacccaccagaccaatctgatgactcccactttggttgaaattttggcatgaaaccttccaaacattcacatattggaaagtcattaa |
317 |
Q |
| |
|
||| |||| | |||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
5848727 |
gttctcctgaggcacccaccagaccaattcaatgacttccattttggttgaaattttggcatgaaaccttccaagcattcacatattggaaagttattaa |
5848628 |
T |
|
| Q |
318 |
tattgcagttagaattgataccacaaaaggcataa |
352 |
Q |
| |
|
||||||||||||| |||||||| || ||||||||| |
|
|
| T |
5848627 |
tattgcagttagagttgataccgcacaaggcataa |
5848593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 20 - 351
Target Start/End: Original strand, 20343674 - 20344005
Alignment:
| Q |
20 |
ttgtgaaaccaaagtatgcagccactcccaccatctctgatatctaaagttgcatatgcattgcaagtacagtttttcaaacacattgtcttacattcct |
119 |
Q |
| |
|
|||| ||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||| ||||| |||| |||||||||||| | ||||||||||||| |
|
|
| T |
20343674 |
ttgtcaaaccaaagtaagcaaccactcccaccatctctgatatctaaatttgcatatgcagtgcaattacaatttttcaaacacgtcgtcttacattcct |
20343773 |
T |
|
| Q |
120 |
caaggcttaaggttttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtacggtaaaaatccatctacatggagacaatttcaatgtgt |
219 |
Q |
| |
|
|||||| ||| | |||||| |||| ||||| ||||| |||||||||||||||||||||||| |||||||||||| ||| ||||||||| | | ||| |
|
|
| T |
20343774 |
gaaggctcaagctcttgtcataccatgatgccgacgtgtctggcaacttcatgtttgtgtacttcaaaaatccatctccattgagacaattcaattttgt |
20343873 |
T |
|
| Q |
220 |
tttccttacacacccaccagaccaatctgatgactcccactttggttgaaattttggcatgaaaccttccaaacattcacatattggaaagtcattaata |
319 |
Q |
| |
|
| |||| | |||||| ||||||||||| ||||||| ||| |||| ||||||||||||| ||||||||||||| |||||||| |||||| | ||||||||| |
|
|
| T |
20343874 |
tctcctcagacacccgccagaccaatccgatgacttccattttgattgaaattttggcgtgaaaccttccaagcattcacaaattggagattcattaata |
20343973 |
T |
|
| Q |
320 |
ttgcagttagaattgataccacaaaaggcata |
351 |
Q |
| |
|
||||||||||| ||||| |||||| ||||||| |
|
|
| T |
20343974 |
ttgcagttagagttgatcccacaacaggcata |
20344005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 25 - 238
Target Start/End: Original strand, 5484842 - 5485055
Alignment:
| Q |
25 |
aaaccaaagtatgcagccactcccaccatctctgatatctaaagttgcatatgcattgcaagtacagtttttcaaacacattgtcttacattcctcaagg |
124 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5484842 |
aaaccaaagtaagcagccactcccaccatctctgatatctaaatttgcatatgcagtgcaagaacagtttttcaaacacattgtcttacattccttaagg |
5484941 |
T |
|
| Q |
125 |
cttaaggttttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtacggtaaaaatccatctacatggagacaatttcaatgtgttttcc |
224 |
Q |
| |
|
|| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||| |||| ||||||| |
|
|
| T |
5484942 |
ctcaagctcttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtacggtaaaaatccatctccatcgggacaatttaaatgcgttttcc |
5485041 |
T |
|
| Q |
225 |
ttacacacccacca |
238 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5485042 |
ttacacacccacca |
5485055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 20 - 352
Target Start/End: Complemental strand, 5828196 - 5827864
Alignment:
| Q |
20 |
ttgtgaaaccaaagtatgcagccactcccaccatctctgatatctaaagttgcatatgcattgcaagtacagtttttcaaacacattgtcttacattcct |
119 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||| || ||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5828196 |
ttgttaaaccaaagtaagcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacattcct |
5828097 |
T |
|
| Q |
120 |
caaggcttaaggttttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtacggtaaaaatccatctacatggagacaatttcaatgtgt |
219 |
Q |
| |
|
||||||| ||| | |||||| |||| |||| |||||| ||||||||||||||| |||||||| ||||| ||||| ||| ||| ||||| | | ||| |
|
|
| T |
5828096 |
caaggctcaagttcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtacttcaaaaagccatcaccattgaggcaattcaattttgt |
5827997 |
T |
|
| Q |
220 |
tttccttacacacccaccagaccaatctgatgactcccactttggttgaaattttggcatgaaaccttccaaacattcacatattggaaagtcattaata |
319 |
Q |
| |
|
| |||| ||||||||||||||||| || |||| ||| |||| ||||||||||||||||||||||||||| |||||||||| |||||| ||||||||| |
|
|
| T |
5827996 |
tctcctccgacacccaccagaccaattcgacgacttccattttgtttgaaattttggcatgaaaccttccaagcattcacatactggaaaatcattaata |
5827897 |
T |
|
| Q |
320 |
ttgcagttagaattgataccacaaaaggcataa |
352 |
Q |
| |
|
||||| || || || |||| ||||||||||||| |
|
|
| T |
5827896 |
ttgcaatttgagttaatactacaaaaggcataa |
5827864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 20 - 352
Target Start/End: Complemental strand, 5802528 - 5802196
Alignment:
| Q |
20 |
ttgtgaaaccaaagtatgcagccactcccaccatctctgatatctaaagttgcatatgcattgcaagtacagtttttcaaacacattgtcttacattcct |
119 |
Q |
| |
|
|||| ||||||||||| ||||||||| |||||||| ||||||||| || |||||||||| |||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
5802528 |
ttgttaaaccaaagtaagcagccactaccaccatccctgatatctgaatttgcatatgcggtgcaagaacagtttttcaaacacattgtcttacattctt |
5802429 |
T |
|
| Q |
120 |
caaggcttaaggttttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtacggtaaaaatccatctacatggagacaatttcaatgtgt |
219 |
Q |
| |
|
||||||| ||| | |||| | | |||||| ||| |||||||| |||||||||||||||||| ||||| ||||| ||| ||||||||| | | ||| |
|
|
| T |
5802428 |
caaggctaaagctcttgttataatacgatgatgatgtatctggtaacttcatgtttgtgtacttcaaaaagccatcaccattgagacaattcaattttgt |
5802329 |
T |
|
| Q |
220 |
tttccttacacacccaccagaccaatctgatgactcccactttggttgaaattttggcatgaaaccttccaaacattcacatattggaaagtcattaata |
319 |
Q |
| |
|
| |||| | |||||||||||||||||||||||||||||||| | ||| |||||| |||||||||||||||| |||||||||| |||||| ||||||||| |
|
|
| T |
5802328 |
tctcctcagacacccaccagaccaatctgatgactcccactgtagttcaaatttcggcatgaaaccttccacgcattcacatactggaaattcattaata |
5802229 |
T |
|
| Q |
320 |
ttgcagttagaattgataccacaaaaggcataa |
352 |
Q |
| |
|
||||| || || |||||||| || |||| |||| |
|
|
| T |
5802228 |
ttgcaatttgagttgataccgcataaggaataa |
5802196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 5485062 - 5485144
Alignment:
| Q |
272 |
tttggcatgaaaccttccaaacattcacatattggaaagtcattaatattgcagttagaattgataccacaaaaggcataagc |
354 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
5485062 |
tttgacatgaaaccttccaagcattcacatattggaaagctttcgccattgcagttagaattgataccacacaagtcataagc |
5485144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 25 - 354
Target Start/End: Complemental strand, 25809312 - 25808986
Alignment:
| Q |
25 |
aaaccaaagtatgcagccactcccaccatctctgatatctaaagttgcatatgcattgcaagtacagtttttcaaacacattgtcttacattcctcaagg |
124 |
Q |
| |
|
|||||| |||| ||||||||| ||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25809312 |
aaaccagagtaagcagccact---accatatctgatatctaaagttgcatatgcagaacaagaacagtttttcaaacacattgtcttacattcctcaagg |
25809216 |
T |
|
| Q |
125 |
cttaaggttttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtacggtaaaaatccatctacatggagacaatttcaatgtgttttcc |
224 |
Q |
| |
|
|| ||| | |||| | |||| |||| ||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
25809215 |
ctcaagatcttgttataccatgatgatgatgtatctggtaacttcatgtttgtgtacggtaaaaatccatctccatggagacaatttaaatgtgttttcc |
25809116 |
T |
|
| Q |
225 |
ttacacacccaccagaccaatctgatgactcccactttggttgaaattttggcatgaaaccttccaaacattcacatattggaaagtcattaatattgca |
324 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
25809115 |
ttacgcacccaccagaccaatctgatgcctcccacttcagttgaaattttggcctgaaaccttccaaacatacacatattggaaagtcattcatattgca |
25809016 |
T |
|
| Q |
325 |
gttagaattgataccacaaaaggcataagc |
354 |
Q |
| |
|
||||||||||||||||||||||| |||||| |
|
|
| T |
25809015 |
gttagaattgataccacaaaaggtataagc |
25808986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 34205865 - 34205796
Alignment:
| Q |
25 |
aaaccaaagtatgcagccactcccaccatctctgatatctaaagttgcatatgcattgcaagtacagttt |
94 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||| ||||||| |||||||||| ||||| |||||||| |
|
|
| T |
34205865 |
aaaccaaagtatgcaaccacttccaccatctctgacatctaaacttgcatatgctgtgcaattacagttt |
34205796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 34194286 - 34194339
Alignment:
| Q |
25 |
aaaccaaagtatgcagccactcccaccatctctgatatctaaagttgcatatgc |
78 |
Q |
| |
|
||||||||| | ||||||||| ||||||||||||| ||||||| |||||||||| |
|
|
| T |
34194286 |
aaaccaaagcaagcagccacttccaccatctctgacatctaaatttgcatatgc |
34194339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 34217290 - 34217237
Alignment:
| Q |
25 |
aaaccaaagtatgcagccactcccaccatctctgatatctaaagttgcatatgc |
78 |
Q |
| |
|
||||||||| | ||||||||| ||||||||||||| ||||||| |||||||||| |
|
|
| T |
34217290 |
aaaccaaagcaagcagccacttccaccatctctgacatctaaatttgcatatgc |
34217237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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