View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5730-Insertion-2 (Length: 992)

Name: NF5730-Insertion-2
Description: NF5730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5730-Insertion-2
NF5730-Insertion-2
[»] chr8 (3 HSPs)
chr8 (8-981)||(44764277-44765243)
chr8 (8-122)||(44761823-44761936)
chr8 (67-160)||(24249012-24249105)
[»] chr4 (5 HSPs)
chr4 (8-160)||(36053740-36053892)
chr4 (8-124)||(36050517-36050633)
chr4 (7-122)||(55322523-55322638)
chr4 (45-121)||(45735883-45735959)
chr4 (113-160)||(9236747-9236793)
[»] chr5 (4 HSPs)
chr5 (8-122)||(41709389-41709503)
chr5 (8-122)||(19797245-19797359)
chr5 (41-123)||(8123393-8123475)
chr5 (41-122)||(671328-671409)
[»] chr1 (4 HSPs)
chr1 (8-121)||(23405656-23405769)
chr1 (60-153)||(24618562-24618657)
chr1 (42-123)||(13087572-13087653)
chr1 (41-122)||(18584089-18584170)
[»] chr7 (4 HSPs)
chr7 (8-121)||(11205731-11205844)
chr7 (41-123)||(42513265-42513347)
chr7 (34-122)||(38572408-38572495)
chr7 (129-162)||(17289091-17289124)
[»] chr2 (4 HSPs)
chr2 (8-115)||(45327585-45327685)
chr2 (41-160)||(4472664-4472783)
chr2 (7-61)||(28149295-28149349)
chr2 (8-41)||(28860690-28860723)
[»] chr3 (4 HSPs)
chr3 (41-156)||(30911887-30912002)
chr3 (8-122)||(14029173-14029287)
chr3 (100-156)||(18319371-18319427)
chr3 (41-122)||(36326368-36326449)
[»] scaffold1064 (1 HSPs)
scaffold1064 (113-160)||(321-367)
[»] chr6 (3 HSPs)
chr6 (39-124)||(13886452-13886537)
chr6 (43-110)||(7426464-7426531)
chr6 (41-94)||(7415533-7415586)


Alignment Details
Target: chr8 (Bit Score: 825; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 825; E-Value: 0
Query Start/End: Original strand, 8 - 981
Target Start/End: Complemental strand, 44765243 - 44764277
Alignment:
Q  8 taactaactaatagaatatgcctaaaagatcctttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttatt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44765243 taactaactaatagaatatgcctaaaagatcctttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttatt 44765144  T
Q  108 ctagatatcctatcattaccgaccccttcaagatcaaccttgtcctcaaggttttacaatttgctcatgaaaccaannnnnnnctttcctggatcccatg 207  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||        ||||| |||||||||     
T  44765143 ctagatatcctatcattaccaaccccttcaagatcaaccttgtcctcaaggttgtacaatttgctcatgaaaccaatttt----tttccaggatcccata 44765048  T
Q  208 ccttgaatggtgaccaactagctgatgcagaggtactaagatatccaccgggatcccactgttgttctcttccactcctaaaaaacaatacaaattgcgt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44765047 ccttgaatggtgaccaactagctgatgcagaggtactaagatatccaccgggatcccactgttgttctcttccactcctaaaaaacaatacaaattgcgt 44764948  T
Q  308 ttgcaccattttaatcaactctgccttggtgtcaccgttgattttctcaacattccccaaatttttctgttgctgcccaatattaaaatgacaagaaatg 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  44764947 ttgcaccattttaatcaactctgccttggtgtcaccgttgattttctcaacattccccaaatttttttgttgctgcccaatattaaaatgacaagaaatg 44764848  T
Q  408 gaaaattttctgaaataattttggccaatggcctcaaaacttatttgacagtcaacagctccaaccatggtgcatacaatgttgtgaagccaagccttca 507  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  44764847 gaaagttttctgaaataattttggccaatggcctcaaaactgatttgacagtcaacaactccaaccatggcgcatacaatgttgtgaagccaagccttca 44764748  T
Q  508 aaacttcagtggcattgttaacaaaagaagcttgtaacaaatcccaattttccattccataattctcagttgacaacacagctaaatggatctcatagct 607  Q
    ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44764747 aaagttcagtggcattgttagcaaaagaagcttgtaacaaatcccaattttccattccataattctcagttgacaacacagctaaatggatttcatagct 44764648  T
Q  608 gtcaattttagtaacaaccaatgaattgccaagacaatgtccaacatcaattgtgtgaattgcatcagcaagatctttatggttatatgcaaagccttgc 707  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44764647 gtcaattttagtaacaaccaatgcattgccaagacaatgtccaacatcaattgtgtgaattgcatcagcaagatctttatggttatatgcaaagccttgc 44764548  T
Q  708 aatcccccaaaagaaagataaataagtctttcaaatttccaagaactcttttcatgagaccagtagcatacaagtggtgcatgctttaggtgattacaaa 807  Q
    ||||||||||||| ||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  44764547 aatcccccaaaagcaagataaataagtctttcaaatttcc---aactcttttcatgagaccagtagcatacaagtggtgcatgctttatgtgattacaaa 44764451  T
Q  808 tcaacttatctaaaccaatgtattcaaccat-aaatattgcttagaatcaagtgcagctatatgatctctaatgttatcactcttgggccaaaacacc-a 905  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |    
T  44764450 tcaacttatctaaaccaatgtactcaaccataaaatattgcttagaatcaagtgcagctatatgatctctaatgttatcactcttgggcc-aaacaccaa 44764352  T
Q  906 agtcaatagcaccatcactaatatcttccaaaagaacaagaacactagaccattccaggttgccttgattagactt 981  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||    
T  44764351 attcaatagcaccatcactaatatcttccaaaagaacaagaacactaga-caatccaggttgccttgaatagactt 44764277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 44761936 - 44761823
Alignment:
Q  8 taactaactaatagaatatgcctaaaagatcctttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttatt 107  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44761936 taactaactaatagaatatgtctaaaa-atcctttctagattaagatgagtcaaactaccttctagaactaggggagtcaccacatttatattccttatt 44761838  T
Q  108 ctagatatcctatca 122  Q
    |||||||||||||||    
T  44761837 ctagatatcctatca 44761823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 160
Target Start/End: Complemental strand, 24249105 - 24249012
Alignment:
Q  67 cttctagaactaggggagtcaccacatttatattccttattctagatatcctatcattaccgaccccttcaagatcaaccttgtcctcaaggtt 160  Q
    |||||||||||||  || |||||||||   |  |||||||| |  |||||||||||||| | |||||||||| |||||| ||||||||||||||    
T  24249105 cttctagaactagacgaatcaccacatgagtgctccttattttgaatatcctatcattatctaccccttcaatatcaacgttgtcctcaaggtt 24249012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 133; Significance: 1e-68; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 8 - 160
Target Start/End: Complemental strand, 36053892 - 36053740
Alignment:
Q  8 taactaactaatagaatatgcctaaaagatcctttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttatt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || || |||||    
T  36053892 taactaactaatagaatatgcctaaaagatcctttctagattaagatgagtcatactaccttctagaactaggggagtcaccacattagtactcattatt 36053793  T
Q  108 ctagatatcctatcattaccgaccccttcaagatcaaccttgtcctcaaggtt 160  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36053792 ctaaatatcctatcattaccgaccccttcaagatcaaccttgtcctcaaggtt 36053740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 36050633 - 36050517
Alignment:
Q  8 taactaactaatagaatatgcctaaaagatcctttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttatt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || || |||||    
T  36050633 taactaactaatagaatatgcctaaaagatcctttctagattaagatgagtcatactaccttctagaactaggggagtcaccacattagtactcattatt 36050534  T
Q  108 ctagatatcctatcatt 124  Q
    ||| |||||||||||||    
T  36050533 ctaaatatcctatcatt 36050517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 55322523 - 55322638
Alignment:
Q  7 ataactaactaatagaatatgcctaaaagatcctttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttat 106  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    | |||| ||||||||||| ||||    
T  55322523 ataactaactaatagaatatgcctaaaagatcccatctagattaagatgagtcatactaccttctagaactagctcggccacctcatttatattcattat 55322622  T
Q  107 tctagatatcctatca 122  Q
    ||||||||||||||||    
T  55322623 tctagatatcctatca 55322638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 121
Target Start/End: Complemental strand, 45735959 - 45735883
Alignment:
Q  45 agattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatc 121  Q
    |||||||||||| |||||||| |||||||| |||   ||||| | ||||||||| ||||||||| | ||||||||||    
T  45735959 agattaagatgattcatactagcttctagatctaaatgagtcgcgacatttatactccttattcaaaatatcctatc 45735883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 9236793 - 9236747
Alignment:
Q  113 tatcctatcattaccgaccccttcaagatcaaccttgtcctcaaggtt 160  Q
    ||||||||||||||| |||| ||||| |||||||||||||||||||||    
T  9236793 tatcctatcattacctaccc-ttcaatatcaaccttgtcctcaaggtt 9236747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 2e-55; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 41709503 - 41709389
Alignment:
Q  8 taactaactaatagaatatgcctaaaagatcctttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttatt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41709503 taactaactaatagaatatgcctaaaagatcctttctagattaagatgagtcatactaccttctagaactagaggagtcaccacatttatattccttatt 41709404  T
Q  108 ctagatatcctatca 122  Q
    |||||||||||||||    
T  41709403 ctagatatcctatca 41709389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 19797359 - 19797245
Alignment:
Q  8 taactaactaatagaatatgcctaaaagatcctttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttatt 107  Q
    |||||||| |||| |||||||||||||||| | || || ||||||| || |||| |||||||| ||||||||  |||||| |||||||||| |  |||||    
T  19797359 taactaaccaatataatatgcctaaaagattccttttaaattaagaggaatcattctaccttccagaactagatgagtcatcacatttatacttgttatt 19797260  T
Q  108 ctagatatcctatca 122  Q
    ||| |||||||||||    
T  19797259 ctaaatatcctatca 19797245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 123
Target Start/End: Complemental strand, 8123475 - 8123393
Alignment:
Q  41 ttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatcat 123  Q
    |||||||||||| | ||||||| || |||||||||||||  ||||||||| |||  |  ||||||||||| ||||||||||||    
T  8123475 ttctagattaaggtcagtcataataacttctagaactagatgagtcaccagattagtgctccttattctaaatatcctatcat 8123393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 671409 - 671328
Alignment:
Q  41 ttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatca 122  Q
    |||||||||||| ||||||||| || | ||||||| |||  ||||||| | ||| ||  ||||||||||| |||||||||||    
T  671409 ttctagattaaggtgagtcataataacatctagaattagccgagtcactatattaatgctccttattctaaatatcctatca 671328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 2e-52; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 23405656 - 23405769
Alignment:
Q  8 taactaactaatagaatatgcctaaaagatcctttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttatt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  23405656 taactaactaatagaatatgcctaaaagatcctttctagattaagatgagtcatactaccttctagaactaggggagtcatcatatttatattccttatt 23405755  T
Q  108 ctagatatcctatc 121  Q
    ||||||||||||||    
T  23405756 ctagatatcctatc 23405769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 60 - 153
Target Start/End: Original strand, 24618562 - 24618657
Alignment:
Q  60 atactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctat--cattaccgaccccttcaagatcaaccttgtcct 153  Q
    ||||||||||| ||||||||  ||||||||| ||||||| |||||||| || ||| |||||  |||||||||||||||||||||||||||||||||    
T  24618562 atactaccttcaagaactagttgagtcaccaaatttatactccttattttaaataccctatatcattaccgaccccttcaagatcaaccttgtcct 24618657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 13087653 - 13087572
Alignment:
Q  42 tctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatcat 123  Q
    ||||||||||| ||||||||| || |||||||||||||  ||||||||||||| ||  ||||||||||  ||||||||||||    
T  13087653 tctagattaaggtgagtcataataacttctagaactagccgagtcaccacattaatgctccttattctgaatatcctatcat 13087572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 18584089 - 18584170
Alignment:
Q  41 ttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatca 122  Q
    |||||||||||| ||||||||| || ||| || ||||||   || ||||||||| ||  ||||||||||| |||||||||||    
T  18584089 ttctagattaaggtgagtcataataacttttataactagctaagccaccacattaatgctccttattctaaatatcctatca 18584170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 4e-50; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 11205844 - 11205731
Alignment:
Q  8 taactaactaatagaatatgcctaaaagatcctttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttatt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||    
T  11205844 taactaactaatagaatatgcctaaaagatcctttctagattaagatgagtcatactactttctagaactaggagagtcaccacatttatattccatatt 11205745  T
Q  108 ctagatatcctatc 121  Q
    ||||||||||||||    
T  11205744 ctagatatcctatc 11205731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 42513265 - 42513347
Alignment:
Q  41 ttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatcat 123  Q
    |||||||||||| ||||||||| || |||||||||||||  |||||||||||||  |  ||||||||||| ||||||||||||    
T  42513265 ttctagattaaggtgagtcataataacttctagaactagatgagtcaccacattagtgctccttattctaaatatcctatcat 42513347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 38572408 - 38572495
Alignment:
Q  34 agatcctttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatca 122  Q
    ||||||||| ||||||||| ||||||||| || |||||||||||||  |||||| ||||||  || || |||||||| |||| ||||||    
T  38572408 agatccttt-tagattaaggtgagtcataataacttctagaactagctgagtcagcacattagtactcattattctaaatatactatca 38572495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 162
Target Start/End: Original strand, 17289091 - 17289124
Alignment:
Q  129 accccttcaagatcaaccttgtcctcaaggtttt 162  Q
    |||||||| |||||||||||||||||||||||||    
T  17289091 accccttcgagatcaaccttgtcctcaaggtttt 17289124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 1e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 45327585 - 45327685
Alignment:
Q  8 taactaactaatagaatatgcctaaaagatcctttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttatt 107  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||| |||||||||||||||||       |||||||||||||    
T  45327585 taactaactaatagaatatgcctaaaagatcctttctggattaagataagtcattctaccttttagaactaggggagtca-------tatattccttatt 45327677  T
Q  108 ctagatat 115  Q
    ||||||||    
T  45327678 ctagatat 45327685  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 41 - 160
Target Start/End: Complemental strand, 4472783 - 4472664
Alignment:
Q  41 ttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatcattaccgaccccttcaaga 140  Q
    |||||||||||| ||| ||||  |  |||||||||||||| ||||||||| ||  ||  |||||||| ||  ||||||||||||| | | ||||||||||    
T  4472783 ttctagattaaggtgaatcatctttgcttctagaactaggtgagtcaccatataaatgctccttattttaactatcctatcattatctatcccttcaaga 4472684  T
Q  141 tcaaccttgtcctcaaggtt 160  Q
    ||||||||||||||||||||    
T  4472683 tcaaccttgtcctcaaggtt 4472664  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 28149349 - 28149295
Alignment:
Q  7 ataactaactaatagaatatgcctaaaagatcctttctagattaagatgagtcat 61  Q
    |||||||||||||| ||||||| |||||||||  |||||||||||||||||||||    
T  28149349 ataactaactaataaaatatgcataaaagatctcttctagattaagatgagtcat 28149295  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 28860723 - 28860690
Alignment:
Q  8 taactaactaatagaatatgcctaaaagatcctt 41  Q
    ||||||||||||| ||||||||||||||||||||    
T  28860723 taactaactaatataatatgcctaaaagatcctt 28860690  T

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Target: chr3 (Bit Score: 64; Significance: 2e-27; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 41 - 156
Target Start/End: Complemental strand, 30912002 - 30911887
Alignment:
Q  41 ttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatcattaccgaccccttcaaga 140  Q
    |||||||||||| ||||||||| || ||||||||||||   |||||| ||||||  || || ||||||||  ||||||||||||||||||||||||||||    
T  30912002 ttctagattaaggtgagtcataataacttctagaactaaccgagtcatcacattagtactcattattctaagtatcctatcattaccgaccccttcaaga 30911903  T
Q  141 tcaaccttgtcctcaa 156  Q
    ||||||||||||||||    
T  30911902 tcaaccttgtcctcaa 30911887  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 14029287 - 14029173
Alignment:
Q  8 taactaactaatagaatatgcctaaaagatcctttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttatt 107  Q
    ||||||||||||||||||||| |||||||| | |||||||||||||||| |||| |||||||||||||||||  |||||||| ||||| |  | ||||||    
T  14029287 taactaactaatagaatatgcttaaaagattccttctagattaagatgattcattctaccttctagaactagccgagtcaccgcatttgtgcttcttatt 14029188  T
Q  108 ctagatatcctatca 122  Q
    ||| ||||| |||||    
T  14029187 ctaaatatcttatca 14029173  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 18319427 - 18319371
Alignment:
Q  100 tccttattctagatatcctatcattaccgaccccttcaagatcaaccttgtcctcaa 156  Q
    |||||||| ||  |||||||||| |||||||||||||||||||||||||||||||||    
T  18319427 tccttattttaagtatcctatcactaccgaccccttcaagatcaaccttgtcctcaa 18319371  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 36326449 - 36326368
Alignment:
Q  41 ttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatca 122  Q
    |||||||||||  ||||||||| || |||||||||||||  ||||||||||||| ||| || |||||||| |||| ||||||    
T  36326449 ttctagattaatgtgagtcataataacttctagaactagatgagtcaccacattaatactcattattctaaatatgctatca 36326368  T

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Target: scaffold1064 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 367 - 321
Alignment:
Q  113 tatcctatcattaccgaccccttcaagatcaaccttgtcctcaaggtt 160  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||    
T  367 tatcctatcattacctaccc-ttcaagatcaaccttgtcctcaaggtt 321  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 124
Target Start/End: Complemental strand, 13886537 - 13886452
Alignment:
Q  39 ctttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatcatt 124  Q
    |||||||||||||| ||||||||| ||  || |||||||||  |||||||||||||  |  |||||||||||  ||||||||||||    
T  13886537 ctttctagattaaggtgagtcataataatttatagaactagcagagtcaccacattagtgctccttattctaactatcctatcatt 13886452  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 7426531 - 7426464
Alignment:
Q  43 ctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattcta 110  Q
    |||||||||||||||| ||| ||  ||||||||||||  ||||||||||||| ||| || ||||||||    
T  7426531 ctagattaagatgagttataatattttctagaactagctgagtcaccacattaatactcattattcta 7426464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 7415586 - 7415533
Alignment:
Q  41 ttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatt 94  Q
    ||||| |||||||||||||||| ||  ||||||||||||  |||||||||||||    
T  7415586 ttctaaattaagatgagtcataatattttctagaactagctgagtcaccacatt 7415533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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