View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5730-Insertion-3 (Length: 708)
Name: NF5730-Insertion-3
Description: NF5730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5730-Insertion-3 |
 | |
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| [»] chr3 (4 HSPs) |
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| [»] scaffold0137 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 666; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 666; E-Value: 0
Query Start/End: Original strand, 7 - 708
Target Start/End: Original strand, 3896591 - 3897292
Alignment:
| Q |
7 |
atatggaatatcagtgctcaatgctcgtctagctggtcctgcaagaagccaaatatagctttaacttagattatgatcaacttgggataatattataaag |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3896591 |
atatggaatatcagtgctcaatgctcgtctagctggtcctgcaagaagccaaatatagctttaacttagattatgatcaactttggataatattataaag |
3896690 |
T |
|
| Q |
107 |
agaccaatgattattaatcaaaatgctttgacgtgatgattatggtatagacattttaccatgtcatcaaaagtccagagggtgatgttgtttctcaaaa |
206 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3896691 |
agatcaatgattattaatcaaaatgctttgacgtgatgattattgtatagacattttaccatgtcatcaaaagtccagaggatgatgttgtttctcaaaa |
3896790 |
T |
|
| Q |
207 |
gttgcatgcgaaccgtgctgtctttgtagtattcatctcccaatttgagctcattacgtgcttcatctaaagcctatcaacaaggaaaagaaaattgatt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3896791 |
gttgcatgcgaaccgtgctgtctttgtagtattcatctcccaatttgagctcattacgtgcttcatctaaagcctatcaacaaggaaaagaaaattgatt |
3896890 |
T |
|
| Q |
307 |
cagtacatgtacaagccaaacatgaacagaaaagagagacacataaagcatttgataagaataggcctttgttcattcaccgacacatataattacatgc |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3896891 |
cagtacatgtacaagccaaacatgaacagaaaagagagacacataaagcatttgataagaataggtctttgttcattcaccgacacatataattacatgc |
3896990 |
T |
|
| Q |
407 |
aatattattaattttctcaaactattatcattgttgacgtgtccgtgcttcatagaaaacattcatcacaaattaaaggaagaacacaactattagtata |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3896991 |
aatattattaattttctcaaactattatcattgttgacgtatccgtgcttcatagaaaacattcatcacaaattaatggaagaacacaactattagtata |
3897090 |
T |
|
| Q |
507 |
acttcatagtgcatatatccctcatagtcattgcaaaacaaacaaacaagattggattaacacaaacctgtctagccatgtcaagaccttcgtcaaaccg |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3897091 |
acttcatagtgcatatatccctcatagtcattgcaaaacaaacaaacaagattggattaacacaaacctgtctagccatgtcaagaccttcgtcaaaccg |
3897190 |
T |
|
| Q |
607 |
gttaagaatttcataatagaaaaccgagaaattcaaagccaaacccaatcttataggatgagaagatcgaagatccgccgtagcaatatccttcaaacaa |
706 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
3897191 |
gttaagaatttcataatagaaaaccgagaaattcaaagccaaacccaatcttataggatgagaagatcgaagatctgccgcagcaatatccttcaaacaa |
3897290 |
T |
|
| Q |
707 |
tc |
708 |
Q |
| |
|
|| |
|
|
| T |
3897291 |
tc |
3897292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 550 - 699
Target Start/End: Complemental strand, 46283795 - 46283646
Alignment:
| Q |
550 |
aaacaagattggattaacacaaacctgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataatagaaaaccgagaaattcaaagccaaa |
649 |
Q |
| |
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||||||||| ||||||||||||||||| | ||||||||| | ||| |||| | | || |||||||| ||||||||||| |||||||| | ||||||| |
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| T |
46283795 |
aaacaagatcagattaacacaaacctgtttggccatgtcacaagctttgtcagattgattgagaatttcgtaatagaaaacagagaaattgagagccaaa |
46283696 |
T |
|
| Q |
650 |
cccaatcttataggatgagaagatcgaagatccgccgtagcaatatcctt |
699 |
Q |
| |
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||||||||||||||||||| ||| |||||||||| | |||||||||||| |
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|
| T |
46283695 |
cccaatcttataggatgagttgatggaagatccgcagcagcaatatcctt |
46283646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 46285347 - 46285233
Alignment:
| Q |
24 |
tcaatgctcgtctagctggtcctgcaagaagccaaatatagctttaacttagattatgatcaacttgggataatatta--taaagagaccaatgattatt |
121 |
Q |
| |
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|||| |||| ||||||||||||||| |||| ||||||||||| |||||| ||||||||||||| |||| ||||||| | ||||||||||||||||| |
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| T |
46285347 |
tcaaggctcatctagctggtcctgc-agaatccaaatatagc-ttaactcagattatgatcaatttggagcaatattaggaagagagaccaatgattatt |
46285250 |
T |
|
| Q |
122 |
aatcaaaatgctttgac |
138 |
Q |
| |
|
||| ||||||||||||| |
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|
| T |
46285249 |
aattaaaatgctttgac |
46285233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 310
Target Start/End: Complemental strand, 46285194 - 46285038
Alignment:
| Q |
157 |
acattttaccatgtcatcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatctcccaatttg--- |
253 |
Q |
| |
|
|||||||||| | ||||| ||||||| ||||||| ||||| ||||||||||||||| || ||||||||||||||| |||| ||||||||| || |
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| T |
46285194 |
acattttacctggacatcagaagtccaaagggtgaggttgtctctcaaaagttgcattataagtgtgctgtctttgtaggattcttctcccaatgtgtcc |
46285095 |
T |
|
| Q |
254 |
agctcattacgtgcttcatctaaagcctatcaacaaggaaaagaaaattgattcagt |
310 |
Q |
| |
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|| ||| | |||||| || |||||||||| | ||||||||||| |||| |||||| |
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|
| T |
46285094 |
agttcagcaattgcttcctcaaaagcctatccagaaggaaaagaatattgtttcagt |
46285038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 653; Significance: 0; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 653; E-Value: 0
Query Start/End: Original strand, 7 - 708
Target Start/End: Original strand, 4245 - 4948
Alignment:
| Q |
7 |
atatggaatatcagtgctcaatgctcgtctagctggtcctgcaagaagccaaatatagctttaacttagattatgatcaacttgggataatattataaag |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4245 |
atatggaatatcagtgctcaatgctcgtctagctggtcctgcatgaagccaaatatagctttaacttagattatgatcaacttgggataatattataaag |
4344 |
T |
|
| Q |
107 |
agaccaatgattattaatcaaaatgctttgacgtgatgattatggtatagacattttaccatgtcatcaaaagtccagagggtgatgttgtttctcaaaa |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4345 |
agaccaatgattattaatcaaaatgctttgacgtgatgattattgtatagacattttaccgtgtcatcaaaagtccagagggtgatgttgtttctcaaaa |
4444 |
T |
|
| Q |
207 |
gttgcatgcgaaccgtgctgtctttgtagtattcatctcccaatttgagctcattacgtgcttcatctaaagcctatcaacaaggaaaagaaaattgatt |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4445 |
gttgcatgcgaaccgtgctgtctttgtagtattcatctcccaatttgagctcattacgtgcttcatctaaagcctatcaacaaggaaaataaaattgatt |
4544 |
T |
|
| Q |
307 |
cagtacatgtacaagccaaacatgaacagaaaagagagacacataaagcatttgataagaataggcctttgttcattcaccgacacatataattacatgc |
406 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4545 |
cagtacaagtacaagccaaacatgaacagaaaagagagacacataaagcatttgataagaataggcctttgttcattcacctacacatataattacatgc |
4644 |
T |
|
| Q |
407 |
--aatattattaattttctcaaactattatcattgttgacgtgtccgtgcttcatagaaaacattcatcacaaattaaaggaagaacacaactattagta |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4645 |
ttaatattattaattttctcaaactattatcattgttgacgtatccgtgcttcatagaaaacattcatcacaaattaatggaagaacacaactattagta |
4744 |
T |
|
| Q |
505 |
taacttcatagtgcatatatccctcatagtcattgcaaaacaaacaaacaagattggattaacacaaacctgtctagccatgtcaagaccttcgtcaaac |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4745 |
taacttcatagtgcatatatccctcatagtcattgcaaaacaaacaaacaagattggattaacacaaacctgtctagccatgtcaagaccttcgtcaaac |
4844 |
T |
|
| Q |
605 |
cggttaagaatttcataatagaaaaccgagaaattcaaagccaaacccaatcttataggatgagaagatcgaagatccgccgtagcaatatccttcaaac |
704 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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|
| T |
4845 |
cggttaagaatttcataatagaaaaccgagaaattcaaagccaaacccaatcttataggatgagaagatcgaagatccgcagcagcaatatccttcaaac |
4944 |
T |
|
| Q |
705 |
aatc |
708 |
Q |
| |
|
|||| |
|
|
| T |
4945 |
aatc |
4948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 617 - 654
Target Start/End: Original strand, 39356413 - 39356450
Alignment:
| Q |
617 |
tcataatagaaaaccgagaaattcaaagccaaacccaa |
654 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
39356413 |
tcataatagaaaactgagaaattcaaagccagacccaa |
39356450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 417 - 465
Target Start/End: Complemental strand, 24806969 - 24806921
Alignment:
| Q |
417 |
attttctcaaactattatcattgttgacgtgtccgtgcttcatagaaaa |
465 |
Q |
| |
|
||||||||||| | ||||| ||||||||||||||||||| |||||||| |
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| T |
24806969 |
attttctcaaaattttatccatgttgacgtgtccgtgcttgatagaaaa |
24806921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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