View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5730-Insertion-4 (Length: 605)
Name: NF5730-Insertion-4
Description: NF5730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5730-Insertion-4 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 8 - 420
Target Start/End: Original strand, 24899668 - 24900080
Alignment:
| Q |
8 |
gatagaacttcttcttgattgcaaagaaagaaagccatgtgagatgattttggtgcttttggagatgttatgtcaatgtgctgatggaagatttgaactt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24899668 |
gatagaacttcttcttgattgcaaagaaagaaagccatgtgagatgattttggtgcttttggagatgttatgtcaatgtgctgatggaagatttgaactt |
24899767 |
T |
|
| Q |
108 |
ctaagccatggatgtggtttggctattgtttcaaagaagattttgagggtttcaacaatggctaatgatagagctgtgaggattcttctatcagtttcaa |
207 |
Q |
| |
|
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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|
| T |
24899768 |
ttaatccatggatgtggtttagctattgtttcaaagaagattttgagggtttcaacaatggctaatgatagagctgtgagtattcttctatctgtttcaa |
24899867 |
T |
|
| Q |
208 |
gattttctgctacacattttgttattcaagaaatgttgagaattggtgttgttgctaagctttgtttggttcttcaagttgatagtggaaataaggcaaa |
307 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24899868 |
gattttctgctacacattttgttgttcaagaaatgttgagaattggtgttgttgctaagctttgtttggttcttcaagttgatagtggaaataaggcaaa |
24899967 |
T |
|
| Q |
308 |
ggagaaagcaagagagattcttaaattgcattcaaagttttggatgaattctcattgcataccttttaatttacttgcttcatacccaacaagtgggtaa |
407 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24899968 |
ggagaaagcaagggagattcttaaattgcattcaaagtcttggatgaattctcattgcataccttttaatttacttgcttcatacccaacaagtgggtaa |
24900067 |
T |
|
| Q |
408 |
aaaattgctaggg |
420 |
Q |
| |
|
||||||||||||| |
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|
| T |
24900068 |
aaaattgctaggg |
24900080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 8 - 420
Target Start/End: Complemental strand, 24890299 - 24889887
Alignment:
| Q |
8 |
gatagaacttcttcttgattgcaaagaaagaaagccatgtgagatgattttggtgcttttggagatgttatgtcaatgtgctgatggaagatttgaactt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24890299 |
gatagaacttcttcttgattgcaaagaaagaaagccatgtgagatgattttggtgcttttggagatgttatgtcaatgtgctgatggaagatttgaacta |
24890200 |
T |
|
| Q |
108 |
ctaagccatggatgtggtttggctattgtttcaaagaagattttgagggtttcaacaatggctaatgatagagctgtgaggattcttctatcagtttcaa |
207 |
Q |
| |
|
||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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|
| T |
24890199 |
ataaaccatggatgaggtttagctattgtttcaaagaagattttgagggtttcaacaatggctaatgatagagctgtgagaattcttctatctgtttcaa |
24890100 |
T |
|
| Q |
208 |
gattttctgctacacattttgttattcaagaaatgttgagaattggtgttgttgctaagctttgtttggttcttcaagttgatagtggaaataaggcaaa |
307 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24890099 |
gattttctgctacacattttgttgttcaagaaatgttgagaattggtgttgttgctaagctttgtttggttcttcaagttgatagtggaaataaggcaaa |
24890000 |
T |
|
| Q |
308 |
ggagaaagcaagagagattcttaaattgcattcaaagttttggatgaattctcattgcataccttttaatttacttgcttcatacccaacaagtgggtaa |
407 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24889999 |
ggagaaagcaagggagattcttaaattgcattcaaagtcttggatgaattctcattgcataccttttaatttacttgcttcatacccaacaagtgggtaa |
24889900 |
T |
|
| Q |
408 |
aaaattgctaggg |
420 |
Q |
| |
|
||||||||||||| |
|
|
| T |
24889899 |
aaaattgctaggg |
24889887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 8 - 420
Target Start/End: Original strand, 24907127 - 24907539
Alignment:
| Q |
8 |
gatagaacttcttcttgattgcaaagaaagaaagccatgtgagatgattttggtgcttttggagatgttatgtcaatgtgctgatggaagatttgaactt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24907127 |
gatagaacttcttcttgattgcaaagaaagaaagccatgtgagatgattttggtgcttttggagatgttatgtcaatgtgctgatggaagatttgaactc |
24907226 |
T |
|
| Q |
108 |
ctaagccatggatgtggtttggctattgtttcaaagaagattttgagggtttcaacaatggctaatgatagagctgtgaggattcttctatcagtttcaa |
207 |
Q |
| |
|
||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
24907227 |
ttaaaccatggatgcggtttagctattgtttcaaagaagattttgagggtttcaacaatggctaatgatagagctgtgagaattcttctatctgtttcaa |
24907326 |
T |
|
| Q |
208 |
gattttctgctacacattttgttattcaagaaatgttgagaattggtgttgttgctaagctttgtttggttcttcaagttgatagtggaaataaggcaaa |
307 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24907327 |
gattttctgctacacattttgttgttcaagaaatgttgagaattggtgttgttgctaagctttgtttggttcttcaagttgatagtggaaataaggcaaa |
24907426 |
T |
|
| Q |
308 |
ggagaaagcaagagagattcttaaattgcattcaaagttttggatgaattctcattgcataccttttaatttacttgcttcatacccaacaagtgggtaa |
407 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24907427 |
ggagaaagcaagggagattcttaaattgcattcaaagtcttggatgaattctcattgcataccttttaatttacttgcttcatacccaacaagtgggtaa |
24907526 |
T |
|
| Q |
408 |
aaaattgctaggg |
420 |
Q |
| |
|
||||||||||||| |
|
|
| T |
24907527 |
aaaattgctaggg |
24907539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 468 - 605
Target Start/End: Original strand, 24900128 - 24900265
Alignment:
| Q |
468 |
gtatagaaaatagaattgttcatagaaatttaattggatcatgtgatagttgtgggcataaaataatgtccatgaagaataggtcttaaacatattaggg |
567 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24900128 |
gtatagaaaatagaattgttcatagaaatttaattggatcatgggatagttgtgggcataaaataatgtccatgaagaataggtcttaaacatattaggg |
24900227 |
T |
|
| Q |
568 |
ttaattgtttattgttactgaatacatcatatattgat |
605 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
24900228 |
ttaattgtttattgttaatgaatacatcatatattgat |
24900265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 468 - 605
Target Start/End: Original strand, 24907587 - 24907732
Alignment:
| Q |
468 |
gtatagaaaatagaattgttcatagaaatttaattggatcatgtgatagttgtgggcataaaataatgtcca-----tgaagaataggtcttaaacatat |
562 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||| |||||| | |
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|
| T |
24907587 |
gtatagaaaatagaattgttcatagaaatttaattggataatgggatagttgtgggcataaaataatgtccatgaattgaagaataggtctgaaacat-t |
24907685 |
T |
|
| Q |
563 |
tagggttaattgtttattgtt----actgaatacatcatatattgat |
605 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
24907686 |
tagggttaattgtttattgttaatgaatgaatacatcatatattgat |
24907732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 133 - 394
Target Start/End: Original strand, 43263448 - 43263709
Alignment:
| Q |
133 |
ttgtttcaaagaagattttgagggtttcaacaatggctaatgatagagctgtgaggattcttctatcagtttcaagattttctgctacacattttgttat |
232 |
Q |
| |
|
||||||| ||||||||| | |||||||| ||| | || |||||||| ||||| |||||||| | || ||||||||||| ||||| || | | |||| | |
|
|
| T |
43263448 |
ttgtttctaagaagattctaagggtttcgacacttgcgaatgatagggctgtaaggattctgttgtctgtttcaagattctctgcaactcctaatgttgt |
43263547 |
T |
|
| Q |
233 |
tcaagaaatgttgagaattggtgttgttgctaagctttgtttggttcttcaagttgatagtggaaataaggcaaaggagaaagcaagagagattcttaaa |
332 |
Q |
| |
|
|||||||||| | | | |||||||||| |||||||||||||||||||||||||||||| |||||| |||| | |||||||||||||| ||||| ||||| |
|
|
| T |
43263548 |
tcaagaaatgcttaaacttggtgttgtggctaagctttgtttggttcttcaagttgattgtggaagtaagactaaggagaaagcaagggagatacttaag |
43263647 |
T |
|
| Q |
333 |
ttgcattcaaagttttggatgaattctcattgcataccttttaatttacttgcttcataccc |
394 |
Q |
| |
|
||||| | | | |||| |||||||| ||||||||| |||||| ||| |||||||||| |
|
|
| T |
43263648 |
atgcatgctagggcatggaggaattctccatgcatacctagtaatttgctttcttcataccc |
43263709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 5285350 - 5285450
Alignment:
| Q |
12 |
gaacttcttcttgattgcaaagaaagaaagccatgtgagatgattttggtgcttttggagatgttatgtcaatgtgctgatggaagatttgaacttctaa |
111 |
Q |
| |
|
|||||||||||| |||| |||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| |
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|
| T |
5285350 |
gaacttcttcttcattggaaaggaagaaagccatgcgagatgattttggtgcttttggagatgttatgtcgatgtgctgatggaagatttaaacttttaa |
5285449 |
T |
|
| Q |
112 |
g |
112 |
Q |
| |
|
| |
|
|
| T |
5285450 |
g |
5285450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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