View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5730-Insertion-5 (Length: 540)

Name: NF5730-Insertion-5
Description: NF5730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5730-Insertion-5
NF5730-Insertion-5
[»] chr1 (3 HSPs)
chr1 (8-531)||(38709961-38710485)
chr1 (299-516)||(4397313-4397527)
chr1 (299-515)||(4391632-4391849)
[»] chr5 (12 HSPs)
chr5 (303-516)||(35847122-35847335)
chr5 (299-495)||(25362318-25362514)
chr5 (299-516)||(42742178-42742393)
chr5 (299-516)||(2707085-2707303)
chr5 (299-516)||(29685850-29686068)
chr5 (299-513)||(39368889-39369102)
chr5 (299-433)||(17218822-17218956)
chr5 (327-515)||(3204308-3204495)
chr5 (354-486)||(40377649-40377781)
chr5 (299-470)||(2334583-2334755)
chr5 (408-482)||(25341757-25341831)
chr5 (333-369)||(1223089-1223125)
[»] chr3 (6 HSPs)
chr3 (299-516)||(16285090-16285306)
chr3 (299-515)||(45181619-45181835)
chr3 (299-516)||(17323997-17324214)
chr3 (299-460)||(23087591-23087753)
chr3 (299-510)||(29016508-29016720)
chr3 (299-387)||(35571416-35571504)
[»] chr4 (5 HSPs)
chr4 (299-516)||(26500115-26500332)
chr4 (299-513)||(1799173-1799395)
chr4 (395-516)||(10388585-10388706)
chr4 (396-516)||(17416446-17416566)
chr4 (299-379)||(6760853-6760933)
[»] chr2 (5 HSPs)
chr2 (299-516)||(37128763-37128980)
chr2 (314-511)||(41958261-41958458)
chr2 (398-531)||(4397369-4397503)
chr2 (409-516)||(4161968-4162077)
chr2 (438-522)||(42048194-42048279)
[»] chr8 (5 HSPs)
chr8 (299-511)||(38387947-38388159)
chr8 (299-515)||(46066-46282)
chr8 (344-488)||(4489610-4489754)
chr8 (299-533)||(1579144-1579380)
chr8 (364-444)||(22915928-22916008)
[»] chr7 (2 HSPs)
chr7 (299-516)||(6003398-6003615)
chr7 (303-447)||(2570409-2570553)


Alignment Details
Target: chr1 (Bit Score: 463; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 8 - 531
Target Start/End: Complemental strand, 38710485 - 38709961
Alignment:
Q  8 attaccacacatatggttactacaacctaagtccaagaaccatgccttcttctttgaaattgctttatctcgttgttggataattgtcttcctctgccac 107  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38710485 attaccacacatatggttactacaacctaagtccaagaactatgccttcttctttgaaattgctttatctcgttgttggataattgtcttcctctgccac 38710386  T
Q  108 acccctttatcttccatcatatgtgattttcaaagcatgttcctcttctgtgatccttcattctttgctcatacaccatcaatctacaatttgaagctca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38710385 acccctttatcttccatcatatgtgattttcaaagcatgttcctcttctgtgatccttcattctttgctcatacaccatcaatctacaatttgaagctca 38710286  T
Q  208 tcaattgaaagagtggttacatcatttgaatcttctatagaatatacaatgttcaagtattacaccaaaaagag-aggnnnnnnnnnncaccaaaaacca 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |          ||||||||||||    
T  38710285 tcaattgaaagagtggttacatcatttgaatcttctatagaatatacaatgttcaagtattacaccaaaaagagaaagaaaaaaaaaacaccaaaaacca 38710186  T
Q  307 ccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattttgcttcaa 406  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38710185 ccagcaccctcaaaatgccaaatcccctaataacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattttgcttcaa 38710086  T
Q  407 gcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgacctcgaatc 506  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38710085 gcgttcagcttcgaccaccactcaagttccggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgacctcgaatc 38709986  T
Q  507 aaaagcgatcatcccaaagactccc 531  Q
    ||||||||||| |||||||||||||    
T  38709985 aaaagcgatcagcccaaagactccc 38709961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 299 - 516
Target Start/End: Original strand, 4397313 - 4397527
Alignment:
Q  299 aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattt 398  Q
    ||||||||||||||||||||||||| | |||||| |||||||   |||||||||||||||||||||||||| ||||||||| ||||||| || |||||||    
T  4397313 aaaaaccaccagcaccctcaaaatgccgaatcccataacaac---tcctcaaagaaccaacaccgccaacaatgatcaattaggcacccgatagtgattt 4397409  T
Q  399 tgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgac 498  Q
    |||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||     
T  4397410 tgcttcaaacgttcagcttcgaccaccactcaagatccggtctatcggaggagacatcacaacagcctaaaaggacctgagtcacaaacttactcccgaa 4397509  T
Q  499 ctcgaatcaaaagcgatc 516  Q
    ||||||||||||||||||    
T  4397510 ctcgaatcaaaagcgatc 4397527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 299 - 515
Target Start/End: Complemental strand, 4391849 - 4391632
Alignment:
Q  299 aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattt 398  Q
    |||||| |||||| ||||||||||||| ||||||||||||| || ||||||||||||||||||| |||||||||   |||   ||||   ||   |||||    
T  4391849 aaaaacaaccagccccctcaaaatgtcgaatcccctaacaaaagctcctcaaagaaccaacaccaccaacagtggaaaatcaagcacatgataaagattt 4391750  T
Q  399 tgcttcaagc-gttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcac-aaacttgctcccg 496  Q
    |||||||||  | ||| |||||||||||||||||||||  ||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||    
T  4391749 tgcttcaagatgctcaacttcgaccaccactcaagttcctgtctatcggaggagacatcacaacagcctaaaa-gacctgagtcacaaaacttgctcccg 4391651  T
Q  497 acctcgaatcaaaagcgat 515  Q
    ||| |||||||||||||||    
T  4391650 accccgaatcaaaagcgat 4391632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 150; Significance: 5e-79; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 303 - 516
Target Start/End: Complemental strand, 35847335 - 35847122
Alignment:
Q  303 accaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattttgct 402  Q
    ||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||| | ||||||| ||||||| || |||||||||||    
T  35847335 accaccagcaccctcaaaatgtcgaatcccctaacaacaactcctcaaagaaccaacaccgccaacatttatcaattaggcacccgatagtgattttgct 35847236  T
Q  403 tcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgacctcg 502  Q
    |||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| || |||||||||||| ||||||||||| ||||||||||||||    
T  35847235 tcaaacgttcagcttcgaccaccactcaagtcccggtctatcggaggagacatcacagcagcctaaaaggacccgagtcacaaacgtgctcccgacctcg 35847136  T
Q  503 aatcaaaagcgatc 516  Q
    |||||||| |||||    
T  35847135 aatcaaaatcgatc 35847122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 299 - 495
Target Start/End: Complemental strand, 25362514 - 25362318
Alignment:
Q  299 aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattt 398  Q
    ||||||||||| ||||||||||||||  |||||||||||||||  |||||||||||| ||||||||||||||||||||||| ||||||| || | |||||    
T  25362514 aaaaaccaccatcaccctcaaaatgttgaatcccctaacaacaactcctcaaagaactaacaccgccaacagtgatcaattaggcacccgatagagattt 25362415  T
Q  399 tgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctccc 495  Q
    |||||||| ||||||||||| | |||||||||||||| ||||||||   ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25362414 tgcttcaaacgttcagcttcaatcaccactcaagttccggtctatcaatggagacatcacaacagcctaaaaggacctgagtcacaaacttgctccc 25362318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 299 - 516
Target Start/End: Original strand, 42742178 - 42742393
Alignment:
Q  299 aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattt 398  Q
    |||||||||||||||||||||||||   || ||||||||||||| ||||||||||||||||||||  |||||||| ||||| ||||||  | | ||||||    
T  42742178 aaaaaccaccagcaccctcaaaatgctgaaacccctaacaacagctcctcaaagaaccaacaccgtgaacagtga-caattaggcacctgaag-tgattt 42742275  T
Q  399 tgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgac 498  Q
    | |||||| ||| || ||| |||||||||||||||||  ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  42742276 tccttcaaacgtacaactttgaccaccactcaagttccagtctatcggaggagacatcacaacagcctaaaaggacatgagtcacaaacttgctcccgac 42742375  T
Q  499 ctcgaatcaaaagcgatc 516  Q
    ||||||||||||||||||    
T  42742376 ctcgaatcaaaagcgatc 42742393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 299 - 516
Target Start/End: Complemental strand, 2707303 - 2707085
Alignment:
Q  299 aaaaaccaccagcaccctcaaa-atgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgatt 397  Q
    |||||||||||||||||||||| ||||| || |||||||||| || |||||| | |||||||||| |||||||| |||||||  ||||||| |  |||||    
T  2707303 aaaaaccaccagcaccctcaaacatgtcgaaacccctaacaatagctcctcagataaccaacaccaccaacagtaatcaattaagcacccagtaatgatt 2707204  T
Q  398 ttgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccga 497  Q
    ||||||||| |||||||||| ||||||||||||||||  | ||| ||||||||||||   ||| | ||||||||||| ||||||||||||| ||||||||    
T  2707203 ttgcttcaaacgttcagctttgaccaccactcaagttacgatctttcggaggagacaatgcaaaagcctaaaaggacatgagtcacaaactagctcccga 2707104  T
Q  498 cctcgaatcaaaagcgatc 516  Q
    |||||||||||||| ||||    
T  2707103 cctcgaatcaaaagtgatc 2707085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 299 - 516
Target Start/End: Complemental strand, 29686068 - 29685850
Alignment:
Q  299 aaaaaccaccagcaccctcaaa-atgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgatt 397  Q
    |||||||||||||| ||||||| ||||| || ||||||||||||  |||||||||||||||||||  |||||||| ||||||  |||||  ||  ||| |    
T  29686068 aaaaaccaccagcatcctcaaacatgtcgaaacccctaacaacaactcctcaaagaaccaacaccatcaacagtggtcaattaagcacctgataatgact 29685969  T
Q  398 ttgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccga 497  Q
    ||||||||| ||||||||||| |||||||| ||| ||| ||||||||||||||||| |||||| | |||||||||| |||||||||||||| ||||||||    
T  29685968 ttgcttcaaacgttcagcttccaccaccacacaaattccggtctatcggaggagacttcacaaaagcctaaaaggatctgagtcacaaactagctcccga 29685869  T
Q  498 cctcgaatcaaaagcgatc 516  Q
    | |||||||||||| ||||    
T  29685868 cttcgaatcaaaagtgatc 29685850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 299 - 513
Target Start/End: Complemental strand, 39369102 - 39368889
Alignment:
Q  299 aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattt 398  Q
    ||||||||  ||||| ||||||||| |||| ||||||||||||| ||||| ||||||||||| ||||||||||||| |||  ||||||| | | |||  |    
T  39369102 aaaaaccattagcactctcaaaatgccaaaacccctaacaacagctcctccaagaaccaacatcgccaacagtgataaataaggcacccgaag-tgacat 39369004  T
Q  399 tgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgac 498  Q
    |||||||| ||||||||||||||||||||||| || | ||||   | ||||||||| ||||||| |||||||| |||||||||| |||||||||||||||    
T  39369003 tgcttcaaacgttcagcttcgaccaccactcacgtcccggtcgcactgaggagacaacacaacaacctaaaagaacctgagtcaaaaacttgctcccgac 39368904  T
Q  499 ctcgaatcaaaagcg 513  Q
    |||||||||||||||    
T  39368903 ctcgaatcaaaagcg 39368889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 299 - 433
Target Start/End: Complemental strand, 17218956 - 17218822
Alignment:
Q  299 aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattt 398  Q
    ||||||||||||||||||||||||| | ||| |||||||||||  || ||||||||||||||||||||||||||| ||||| |||||||||| |||||||    
T  17218956 aaaaaccaccagcaccctcaaaatgccgaataccctaacaacaactcatcaaagaaccaacaccgccaacagtgaacaattaggcacccaatagtgattt 17218857  T
Q  399 tgcttcaagcgttcagcttcgaccaccactcaagt 433  Q
    ||||||||  |||||||||||||||||||||||||    
T  17218856 tgcttcaaaagttcagcttcgaccaccactcaagt 17218822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 327 - 515
Target Start/End: Complemental strand, 3204495 - 3204308
Alignment:
Q  327 aatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattttgcttcaagcgttcagcttcgaccacca 426  Q
    |||||||||||||||  |||||||||||||||||||| ||| |||||||||   ||||| |      ||||||||| ||| |||||||||| ||||||||    
T  3204495 aatcccctaacaacaactcctcaaagaaccaacaccgtcaatagtgatcaaaaaggcactcggaaaagattttgctccaa-cgttcagctttgaccacca 3204397  T
Q  427 ctcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcgat 515  Q
    |||||||||| || |||||||||||||||||||||| |||||||| | || ||||||||||||||||||||||||||||||||| ||||    
T  3204396 ctcaagttctagtatatcggaggagacatcacaacagcctaaaagaatctaagtcacaaacttgctcccgacctcgaatcaaaaacgat 3204308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 354 - 486
Target Start/End: Complemental strand, 40377781 - 40377649
Alignment:
Q  354 accaacaccgccaacagtgatcaatttggcacccaatggtgattttgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagac 453  Q
    |||||||||||||||||||||||||| ||  | |||| |||||||| |||||| ||||||| ||| ||||||||||||| || |||||||||||||||||    
T  40377781 accaacaccgccaacagtgatcaattaggtcctcaatagtgattttacttcaaacgttcaggttccaccaccactcaagatccggtctatcggaggagac 40377682  T
Q  454 atcacaacatcctaaaaggacctgagtcacaaa 486  Q
    ||||||||| |||||||||||||||||||||||    
T  40377681 atcacaacagcctaaaaggacctgagtcacaaa 40377649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 299 - 470
Target Start/End: Original strand, 2334583 - 2334755
Alignment:
Q  299 aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaag-aaccaacaccgccaa-cagtgatcaatttggcacccaatggtgat 396  Q
    ||||||||||| |||||||||||||   || |||||||||  || ||||||||| |||||||||||||||  ||||||||||| | || || || |||||    
T  2334583 aaaaaccaccaacaccctcaaaatgctgaaacccctaacagtagctcctcaaagaaaccaacaccgccaatgagtgatcaattagacatccgatagtgat 2334682  T
Q  397 tttgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaa 470  Q
      |||||| | ||  |||||||||||||||||||||||  |||   || ||||||||||||||||| |||||||    
T  2334683 aatgcttccaacgcacagcttcgaccaccactcaagtttcggtaactc-gaggagacatcacaacagcctaaaa 2334755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 408 - 482
Target Start/End: Complemental strand, 25341831 - 25341757
Alignment:
Q  408 cgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtca 482  Q
    ||||||||||| ||||||| |||| ||| ||||  |||||||||||||||||| | |||||||||||||| ||||    
T  25341831 cgttcagcttctaccaccaatcaacttccggtcagtcggaggagacatcacaaaagcctaaaaggacctgtgtca 25341757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 333 - 369
Target Start/End: Complemental strand, 1223125 - 1223089
Alignment:
Q  333 ctaacaacagttcctcaaagaaccaacaccgccaaca 369  Q
    ||||||| || ||||||||||||||||||||||||||    
T  1223125 ctaacaatagctcctcaaagaaccaacaccgccaaca 1223089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 146; Significance: 1e-76; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 299 - 516
Target Start/End: Complemental strand, 16285306 - 16285090
Alignment:
Q  299 aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattt 398  Q
    ||||||||||| ||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||| || |||||||    
T  16285306 aaaaaccaccatcaccctcaaaatgccaaa-cccctaacaacagttccttaaagaaccaacaccgccaacagtgattaattaggcacccgatagtgattt 16285208  T
Q  399 tgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgac 498  Q
    ||||||||  ||||||||| ||||||||||||||||| ||| ||||||||||| | |||||||| |||||||||||||||||| ||||||||||||||||    
T  16285207 tgcttcaaatgttcagctttgaccaccactcaagttccggtttatcggaggagccgtcacaacagcctaaaaggacctgagtcgcaaacttgctcccgac 16285108  T
Q  499 ctcgaatcaaaagcgatc 516  Q
    ||||||||||||||||||    
T  16285107 ctcgaatcaaaagcgatc 16285090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 299 - 515
Target Start/End: Complemental strand, 45181835 - 45181619
Alignment:
Q  299 aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattt 398  Q
    ||||||||||| |||| |||||||| ||||  |||||||||||| ||||||||||||||||||||||||| |||||||||| |||||   || ||||| |    
T  45181835 aaaaaccaccaacaccttcaaaatgccaaaatccctaacaacagctcctcaaagaaccaacaccgccaacggtgatcaattaggcacttgatagtgatat 45181736  T
Q  399 tgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgac 498  Q
    || ||||   ||| |||||||||||||||| |||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  45181735 tgattcagatgtttagcttcgaccaccacttaagttccggtctatcgaaggagacatcacaacagcctaaaaggacctgagtcacaaacttgcttccgac 45181636  T
Q  499 ctcgaatcaaaagcgat 515  Q
    |||||||||||||||||    
T  45181635 ctcgaatcaaaagcgat 45181619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 299 - 516
Target Start/End: Original strand, 17323997 - 17324214
Alignment:
Q  299 aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattt 398  Q
    ||||||||| |||||||| ||||||   |||||||| ||||||  |||||||||||||||||||||||||||||||||||| | ||||  || |||||||    
T  17323997 aaaaaccactagcaccctgaaaatgatgaatcccctgacaacaactcctcaaagaaccaacaccgccaacagtgatcaattcgacacctgatagtgattt 17324096  T
Q  399 tgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgac 498  Q
    |||||||| |||||||||||||||||||||| |||||  || |||||||||||||||||||| | | ||||||||||| ||||| |||||||||||||||    
T  17324097 tgcttcaaacgttcagcttcgaccaccactctagttccagtatatcggaggagacatcacaatagcttaaaaggacctaagtcagaaacttgctcccgac 17324196  T
Q  499 ctcgaatcaaaagcgatc 516  Q
    ||||||||||||| ||||    
T  17324197 ctcgaatcaaaagagatc 17324214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 299 - 460
Target Start/End: Complemental strand, 23087753 - 23087591
Alignment:
Q  299 aaaaaccaccagcaccctcaaaatgtcaaatcccc-taacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgatt 397  Q
    |||||||||||||||||| |||||| | ||||||| ||||||||| || ||||||||||| ||||||||||| ||||||||| |||| || || ||||||    
T  23087753 aaaaaccaccagcacccttaaaatgccgaatccccataacaacagctcatcaaagaaccatcaccgccaacaatgatcaattaggcatccgatagtgatt 23087654  T
Q  398 ttgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaa 460  Q
    || |||||| |||||||||||||| | ||||||||||| | ||||||| ||||||||||||||    
T  23087653 ttacttcaaacgttcagcttcgactatcactcaagttccgatctatcgaaggagacatcacaa 23087591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 299 - 510
Target Start/End: Complemental strand, 29016720 - 29016508
Alignment:
Q  299 aaaaaccaccagcaccctcaaa-atgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgatt 397  Q
    |||||||||||||||||||||| ||| | || ||||||||||||  | ||||| |||||||||||  |||||  | ||||||  |||||| ||  |||||    
T  29016720 aaaaaccaccagcaccctcaaacatgccgaaacccctaacaacaactactcaaggaaccaacaccatcaacatagttcaattacgcacccgataatgatt 29016621  T
Q  398 ttgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaactt-gctcccg 496  Q
    | ||||||| | || ||||||||||||||||||| ||| |||||||||||||||||||| ||| | ||||||||||||| | ||||||| || |||| ||    
T  29016620 t-gcttcaaacattgagcttcgaccaccactcaaattccggtctatcggaggagacatcccaaaaacctaaaaggaccttaatcacaaaattagctctcg 29016522  T
Q  497 acctcgaatcaaaa 510  Q
    ||||||||| ||||    
T  29016521 acctcgaattaaaa 29016508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 299 - 387
Target Start/End: Original strand, 35571416 - 35571504
Alignment:
Q  299 aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcaccc 387  Q
    ||||||||| || |||||||||||| | |||||||||| ||||  |||||||||||| |||||||| || ||||||||| | |||||||    
T  35571416 aaaaaccactagtaccctcaaaatgccgaatcccctaataacaactcctcaaagaactaacaccgcaaaaagtgatcaaatcggcaccc 35571504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 142; Significance: 3e-74; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 299 - 516
Target Start/End: Original strand, 26500115 - 26500332
Alignment:
Q  299 aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattt 398  Q
    |||||||||||  ||||||||||||   |||||||||||||||| ||||||||||||||||||| ||||||||| | |||   |||||| ||  ||||||    
T  26500115 aaaaaccaccaagaccctcaaaatgctgaatcccctaacaacagctcctcaaagaaccaacaccaccaacagtggtgaataaagcacccgatattgattt 26500214  T
Q  399 tgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgac 498  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  26500215 tgcttcaaacgttcagcttcgaccaccactcaagttccggtctatcggaggagacatcacaacagcctaaaaggacttgagtcacaaacttgctcccgac 26500314  T
Q  499 ctcgaatcaaaagcgatc 516  Q
    ||||||||||||||||||    
T  26500315 ctcgaatcaaaagcgatc 26500332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 299 - 513
Target Start/End: Complemental strand, 1799395 - 1799173
Alignment:
Q  299 aaaaaccaccagcaccctcaaaatgtca-aatcccctaacaacagttcctcaaagaaccaacaccgcc-------aacagtgatcaatttggcacccaat 390  Q
    |||||||||||||||||||||||   |  || ||||||||||||| |||||||||||||||||| |||       ||||||||||||   ||||||| ||    
T  1799395 aaaaaccaccagcaccctcaaaaaaactgaaacccctaacaacagctcctcaaagaaccaacactgccgtctgccaacagtgatcaaaaaggcacccgat 1799296  T
Q  391 ggtgattttgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttg 490  Q
      |||| ||||||||| || ||||||||||||||||||||| || |||| |||||||||||||||||||| | |||||||||||||||| ||||||||||    
T  1799295 aatgatgttgcttcaaacgatcagcttcgaccaccactcaaattttggtttatcggaggagacatcacaatagcctaaaaggacctgagacacaaacttg 1799196  T
Q  491 ctcccgacctcgaatcaaaagcg 513  Q
    |||| ||||| ||||||||||||    
T  1799195 ctcctgacctagaatcaaaagcg 1799173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 395 - 516
Target Start/End: Complemental strand, 10388706 - 10388585
Alignment:
Q  395 attttgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcc 494  Q
    |||||||||||| |||| |||||||||||||||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  10388706 attttgcttcaaacgtttagcttcgaccaccactcaagatccggtctatcagaggagacatcacaacagcctaaaaggacctgagtcataaacttgctcc 10388607  T
Q  495 cgacctcgaatcaaaagcgatc 516  Q
    ||||||||||||||||| ||||    
T  10388606 cgacctcgaatcaaaagtgatc 10388585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 396 - 516
Target Start/End: Original strand, 17416446 - 17416566
Alignment:
Q  396 ttttgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctccc 495  Q
    ||||||||||| | ||||||||||||||||||||||  |||||||| |||||||||||||||||| | ||||||||||| |  |  | ||||| |||||     
T  17416446 ttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctcct 17416545  T
Q  496 gacctcgaatcaaaagcgatc 516  Q
    || ||||||||||||| ||||    
T  17416546 gatctcgaatcaaaagtgatc 17416566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 299 - 379
Target Start/End: Complemental strand, 6760933 - 6760853
Alignment:
Q  299 aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatt 379  Q
    |||||||||||||| ||||||||||   || |||||||||| || || |||||||||||||||||||||||||||||||||    
T  6760933 aaaaaccaccagcatcctcaaaatgctgaaacccctaacaatagctcatcaaagaaccaacaccgccaacagtgatcaatt 6760853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 142; Significance: 3e-74; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 299 - 516
Target Start/End: Original strand, 37128763 - 37128980
Alignment:
Q  299 aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattt 398  Q
    ||||||||||||||||||||||||| | |||||||||| ||||| |||||||||||||||||||||||||| |||| |||| ||||||| || |||||||    
T  37128763 aaaaaccaccagcaccctcaaaatgccgaatcccctaaaaacagctcctcaaagaaccaacaccgccaacaatgatgaattaggcacccgatagtgattt 37128862  T
Q  399 tgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgac 498  Q
    ||| ||||  |||||||||||||||||| |||||||  |||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||    
T  37128863 tgcatcaaatgttcagcttcgaccaccattcaagtttcggtctatcggaggagacatcacaacatcctgaaaggacttgagtcacaaacttgttccggac 37128962  T
Q  499 ctcgaatcaaaagcgatc 516  Q
    ||||||||||||||||||    
T  37128963 ctcgaatcaaaagcgatc 37128980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 314 - 511
Target Start/End: Complemental strand, 41958458 - 41958261
Alignment:
Q  314 cctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattttgcttcaagcgttca 413  Q
    |||||||||| | |||||||||||||||  | ||||||||||||||| ||||||||||||| |||| ||| ||| || ||||||||| |||||  |||||    
T  41958458 cctcaaaatgccgaatcccctaacaacaacttctcaaagaaccaacatcgccaacagtgatgaattaggcgcccgatagtgattttgtttcaaatgttca 41958359  T
Q  414 gcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaag 511  Q
    |||||||||||||||||||||  |||||||| |||||||| | ||||||  |||||||||||||||||||||||||||| ||||||||||||||||||    
T  41958358 gcttcgaccaccactcaagtttcggtctatcagaggagacgttacaacagactaaaaggacctgagtcacaaacttgcttccgacctcgaatcaaaag 41958261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 398 - 531
Target Start/End: Original strand, 4397369 - 4397503
Alignment:
Q  398 ttgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccga 497  Q
    ||||||||| ||| |||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4397369 ttgcttcaaacgtacagcttcgaccaccactcaagttccggtctttcggaggagacatcacaacaacctaaaaggacctgagtcacaaacttgctcccga 4397468  T
Q  498 cctcgaatcaaaagcgatcatccca-aagactccc 531  Q
    |||||||||||||||||||| |||| |||||||||    
T  4397469 cctcgaatcaaaagcgatcagcccacaagactccc 4397503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 516
Target Start/End: Original strand, 4161968 - 4162077
Alignment:
Q  409 gttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaa-catcctaaaaggacctgagtcacaaa-cttgctcccgacctcgaatc 506  Q
    |||||| ||||||||||| |||| |||| |||| |||||| ||||| || ||  | ||||||| ||||||| ||| ||| || |||||||| ||||||||    
T  4161968 gttcagattcgaccaccaatcaacttctagtctgtcggagaagacaccaaaataagcctaaaaagacctgactcaaaaagctggctcccgatctcgaatc 4162067  T
Q  507 aaaagcgatc 516  Q
    ||||| ||||    
T  4162068 aaaagtgatc 4162077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 522
Target Start/End: Original strand, 42048194 - 42048279
Alignment:
Q  438 gtctatcggaggagacatcacaacatcctaaaaggacctgagtc-acaaacttgctcccgacctcgaatcaaaagcgatcatccca 522  Q
    |||||||||||||||||||   | | ||||||||||| |||||| | ||||| |||||||  ||||||||||||| ||||| ||||    
T  42048194 gtctatcggaggagacatccatatagcctaaaaggacttgagtcaaaaaactggctcccggtctcgaatcaaaagtgatcagccca 42048279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 7e-69; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 299 - 511
Target Start/End: Complemental strand, 38388159 - 38387947
Alignment:
Q  299 aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattt 398  Q
    ||||||||||||||||||||||||| | || ||||||||||||  ||||| |||||||||||||  ||||||||||||||| ||||||| || |||||||    
T  38388159 aaaaaccaccagcaccctcaaaatgccgaaacccctaacaacaactcctcgaagaaccaacaccatcaacagtgatcaattaggcacccgatagtgattt 38388060  T
Q  399 tgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgac 498  Q
    |||||||| |||||||||||||||||||||||||| || ||||||| || |||||||||||| | ||||||||||||||||||||||||||||||| |||    
T  38388059 tgcttcaaacgttcagcttcgaccaccactcaagtcctagtctatcagatgagacatcacaatagcctaaaaggacctgagtcacaaacttgctcctgac 38387960  T
Q  499 ctcgaatcaaaag 511  Q
    || ||||||||||    
T  38387959 cttgaatcaaaag 38387947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 299 - 515
Target Start/End: Original strand, 46066 - 46282
Alignment:
Q  299 aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattt 398  Q
    ||||||||| |||||||| ||||||   |||||||||||||||  |||||||||||||||||| | ||||| ||||||||| | | ||  || |||||||    
T  46066 aaaaaccactagcaccctgaaaatgatgaatcccctaacaacaactcctcaaagaaccaacactgtcaacaatgatcaattcgacgcctgatagtgattt 46165  T
Q  399 tgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgac 498  Q
    |||||||| |||||| ||| |||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  46166 tgcttcaaacgttcaactttgaccaccactcaagttccagtctatcggaggagacatcacaacaacctaaaaggacctgagtcagaaacttgctcccgac 46265  T
Q  499 ctcgaatcaaaagcgat 515  Q
    || ||||||||||||||    
T  46266 ctggaatcaaaagcgat 46282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 344 - 488
Target Start/End: Original strand, 4489610 - 4489754
Alignment:
Q  344 tcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattttgcttcaagcgttcagcttcgaccaccactcaagttctggtctat 443  Q
    ||||||||||||||||||| |||| |||| | ||||  |||| | ||  |||||||||||||| |||| |||||| ||||||||||||||||  ||||||    
T  4489610 tcctcaaagaaccaacaccaccaatagtgttaaattaagcactcgataatgattttgcttcaaacgtttagcttctaccaccactcaagttccagtctat 4489709  T
Q  444 cggaggagacatcacaacatcctaaaaggacctgagtcacaaact 488  Q
    ||||||||||||||||| | |||||||||| | |||| |||||||    
T  4489710 cggaggagacatcacaaaagcctaaaaggatccgagttacaaact 4489754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 299 - 533
Target Start/End: Complemental strand, 1579380 - 1579144
Alignment:
Q  299 aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattt 398  Q
    ||||||||||| |||||||||  || | || |||||||||| |  || ||||||||||| |||| |||||| ||  |||    |||||||||   || ||    
T  1579380 aaaaaccaccatcaccctcaagctgccgaaacccctaacaaaaactcatcaaagaacca-caccaccaacaatggacaaccaagcacccaataacgaatt 1579282  T
Q  399 tgcttcaagc-gttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaa-acttgctcccg 496  Q
    |||||||||  | ||||||||||||||||||||||||  || |||||| | |||||||||||||| |||| ||||||||||||||||| |||||||||||    
T  1579281 tgcttcaagatgctcagcttcgaccaccactcaagtttcggcctatcgcaagagacatcacaacaacctagaaggacctgagtcacaagacttgctcccg 1579182  T
Q  497 acctcgaatcaaaagcgatcatccca-aagactcccaa 533  Q
    || | |||||||||| ||||  |||| |||||||||||    
T  1579181 actttgaatcaaaagtgatcggcccacaagactcccaa 1579144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 364 - 444
Target Start/End: Complemental strand, 22916008 - 22915928
Alignment:
Q  364 ccaacagtgatcaatttggcacccaatggtgattttgcttcaagcgttcagcttcgaccaccactcaagttctggtctatc 444  Q
    |||||| |||||||||||||| || || |||| |||||||||| |||||||||||||| ||||||||| ||| ||||||||    
T  22916008 ccaacactgatcaatttggcatccgatagtgaatttgcttcaaacgttcagcttcgactaccactcaatttccggtctatc 22915928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 6e-60; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 299 - 516
Target Start/End: Complemental strand, 6003615 - 6003398
Alignment:
Q  299 aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattt 398  Q
    |||||||||||||||||||| || | | || | ||||||||||| ||||||||||||||||||||||||||||||| ||   ||||||  ||  |||| |    
T  6003615 aaaaaccaccagcaccctcacaaagccgaaactcctaacaacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgatattgatgt 6003516  T
Q  399 tgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgac 498  Q
    |||||||| |||||||||||||||||||||||||||   |||||||||||| |||||||||||| |||||||||||||||| |||||| ||||| |||||    
T  6003515 tgcttcaaacgttcagcttcgaccaccactcaagtttcagtctatcggaggcgacatcacaacagcctaaaaggacctgagacacaaatttgcttccgac 6003416  T
Q  499 ctcgaatcaaaagcgatc 516  Q
    ||||||||||||||||||    
T  6003415 ctcgaatcaaaagcgatc 6003398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 303 - 447
Target Start/End: Complemental strand, 2570553 - 2570409
Alignment:
Q  303 accaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattttgct 402  Q
    ||||||||||||| |||||||  ||||| ||||||||||   |||||||||||||||||||||||||||||||||   ||||||| |  |||||||||||    
T  2570553 accaccagcacccccaaaatgctaaatctcctaacaacaacacctcaaagaaccaacaccgccaacagtgatcaaaaaggcacccgaaagtgattttgct 2570454  T
Q  403 tcaagcgttcagcttcgaccaccactcaagttctggtctatcgga 447  Q
    ||||  |||||||||||||||||||||||||  |||| |||||||    
T  2570453 tcaaaggttcagcttcgaccaccactcaagtgttggtatatcgga 2570409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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