View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5730_high_10 (Length: 296)
Name: NF5730_high_10
Description: NF5730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5730_high_10 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 8e-98; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 51804632 - 51804373
Alignment:
| Q |
13 |
aatatcaatgaagccaaaactgtgatgaggagtt--gtccacaaagtccctc-tttcaaagcatacgttcaattacatctgtcattccattgcttgttgt |
109 |
Q |
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| T |
51804632 |
aatatcaatgaaaccaaaactatgatgaggtgttttgttcacgaagtccctcgtttcaaagcatatcttcaattacatctgtcatatcattgcttgttgt |
51804533 |
T |
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| Q |
110 |
atgtcatctcttgtaagttatatcttaaattctttatgttatgctctaatagtggacttgttatattcatctaagcttgcttgagaaattgcctgctcga |
209 |
Q |
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| T |
51804532 |
atgtcatctctagtaagttatatcttaaattctttatgttatgctctaagagtggacttgttctattcatctaagcatgcttgagaaattgcctgctcga |
51804433 |
T |
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| Q |
210 |
tatatttcaaagttttctgatattttacgacacccataagccagaaatcaaaattgtcca |
269 |
Q |
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| T |
51804432 |
tatatttgaaagttttctgatattttaggacacccataagccagaaatcaaaattgtcca |
51804373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 120 - 262
Target Start/End: Complemental strand, 51808472 - 51808329
Alignment:
| Q |
120 |
ttgtaagttatatcttaaattctttatg-ttatgctctaatagtggacttgttatattcatctaagcttgcttgagaaattgcctgctcgatatatttca |
218 |
Q |
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| T |
51808472 |
ttgtatgttatatcttaaattctttgttattatgcactaatagtggacttgttatattcatctactcttgattgagaaattgcctgctcgagatatttga |
51808373 |
T |
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| Q |
219 |
aagttttctgatattttacgacacccataagccagaaatcaaaa |
262 |
Q |
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| T |
51808372 |
aagttttctgatattttagaacacccataagccagaaatcaaaa |
51808329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 51780684 - 51780615
Alignment:
| Q |
189 |
cttgagaaattgcctgctcgatatatttcaaagttttctgatattttacgacacccataagccagaaatc |
258 |
Q |
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| T |
51780684 |
cttgtgaaattgcctgctcgagatatttgaaagttttctgatattttaagacacccataagccagaaatc |
51780615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 161 - 275
Target Start/End: Complemental strand, 51772872 - 51772762
Alignment:
| Q |
161 |
gtggacttgttatattcatctaagcttgcttgagaaattgcctgctcgatatatttcaaagttttctgatattttacgacacccataagccagaaatcaa |
260 |
Q |
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| T |
51772872 |
gtggacttttgatattcatctaagcttg----agaaattgctttctcgagatagttgaatgttttatgataattaaagacacccataaaccagaaatcaa |
51772777 |
T |
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| Q |
261 |
aattgtccaccgtga |
275 |
Q |
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| T |
51772776 |
aattgtccactgtga |
51772762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 51768201 - 51768145
Alignment:
| Q |
189 |
cttgagaaattgcctgctcgatatatttcaaagttttctgatattttacgacaccca |
245 |
Q |
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| T |
51768201 |
cttgagaaatcgccttttcgatatatttgaaagttttctgatatttgaagacaccca |
51768145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 185 - 258
Target Start/End: Complemental strand, 7332 - 7259
Alignment:
| Q |
185 |
cttgcttgagaaattgcctgctcgatatatttcaaagttttctgatattttacgacacccataagccagaaatc |
258 |
Q |
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| T |
7332 |
cttgattgagaaattgcctgctcgagatatttgaaagttttctgatattttaagacacccataagccagaaatc |
7259 |
T |
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