View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5730_high_15 (Length: 249)
Name: NF5730_high_15
Description: NF5730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5730_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 42397566 - 42397346
Alignment:
| Q |
13 |
aatattgatgaagaagaaaaaaggataaaaagaataatagaaaggtgatgttagtttattgctatattttgcatattgcttagttccctaacttcatgtt |
112 |
Q |
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| T |
42397566 |
aatattgatgaagaagaaaaaaggataaaaagaataatagaaaggtgatgtttgtttattgctatattttgcatattgcttagttccctaacttcatgtt |
42397467 |
T |
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| Q |
113 |
catccagtgacatgaaggaagttgtggctt-nnnnnnngtagcgttaagttggatttagtcnnnnnnnnctattttttgtaaagatggtaaattattatg |
211 |
Q |
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| T |
42397466 |
catccagtgacatgaaggaagttgtggcttaaaaaaaaatagcgttaagttggatttagtc-aaaaaaactattttttgtaaagatggtaaattattatg |
42397368 |
T |
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| Q |
212 |
atcctataaaaggagatatttg |
233 |
Q |
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| T |
42397367 |
atcctataaaaggagatatttg |
42397346 |
T |
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