View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5730_low_1 (Length: 567)

Name: NF5730_low_1
Description: NF5730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5730_low_1
NF5730_low_1
[»] chr6 (3 HSPs)
chr6 (16-548)||(17170245-17170772)
chr6 (320-475)||(17143652-17143807)
chr6 (324-544)||(17155754-17155974)
[»] chr8 (2 HSPs)
chr8 (42-121)||(40995822-40995901)
chr8 (68-117)||(6108586-6108635)
[»] chr4 (2 HSPs)
chr4 (42-117)||(27756467-27756542)
chr4 (42-117)||(3427863-3427938)
[»] chr1 (2 HSPs)
chr1 (42-120)||(1408616-1408694)
chr1 (41-117)||(4941199-4941275)
[»] chr5 (3 HSPs)
chr5 (49-120)||(19187144-19187215)
chr5 (42-121)||(21067613-21067692)
chr5 (55-122)||(38282507-38282574)
[»] chr2 (1 HSPs)
chr2 (42-117)||(4614283-4614358)


Alignment Details
Target: chr6 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 16 - 548
Target Start/End: Complemental strand, 17170772 - 17170245
Alignment:
Q  16 ataaataagggtaaggattcaaatgtaatgtagtaagttttaccttaaaatttgtgttgttaagtcttcaaaaacataaaaagtattatttttattataa 115  Q
    ||||||||||||||||||||||| | |     ||||||||||| ||| ||||| ||||||||| | || ||||| ||||||||| ||||||||||| |||    
T  17170772 ataaataagggtaaggattcaaacgca-----gtaagttttacattagaatttatgttgttaattttttaaaaatataaaaagtgttatttttattttaa 17170678  T
Q  116 aacttcannnnnnnaattttcttaaccggtggttaacacgaataaataaataatgtcaaattacacttccaaatcaacaaaatcttacacagaataatat 215  Q
    || ||         ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  17170677 aattttctttttttaatttccttaaccagtggttaacacgaataaataaataatgtcaaattacacttcccaatcaacaaaatcttacacaaaataatat 17170578  T
Q  216 aatatctaccacgtggtcttggttgttgctagagaagttcataaaaaatttagtactataaaaaagtgagacttattggtatttctggatcaaagttgaa 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  17170577 aatatctaccacgtggtcttggttgttgctagagaagttcataaaaaatttagtactataaaaaagtgagacttattggtatttctggatcaaagtagaa 17170478  T
Q  316 actcactgatatggaaacaccattgttgattaaaagctttacttcagaaaatgattacttacctttgaaaaacttgaaagatgtgaaatatgttttgtgg 415  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17170477 actcactcatatggaaacaccattgttgattaaaagctttacttcagaaaatgattacttacctttgaaaaacttgaaagatgtgaaatatgttttgtgg 17170378  T
Q  416 aatgagacattgaagatatggaagatagcaattccagtggctttgtgtttactttttcagaacctaattggctcttcaaatttcatctatgctggtcata 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17170377 aatgagacattgaagatatggaagatagcaattccagtggctttgtctttactttttcagaacctaattggctcttcaaatttcatctatgctggtcata 17170278  T
Q  516 ttggtgatattcagctctcttcttactctgtgt 548  Q
    |||||||||||||||||||||||||||||||||    
T  17170277 ttggtgatattcagctctcttcttactctgtgt 17170245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 320 - 475
Target Start/End: Complemental strand, 17143807 - 17143652
Alignment:
Q  320 actgatatggaaacaccattgttgattaaaagctttacttcagaaaatgattacttacctttgaaaaacttgaaagatgtgaaatatgttttgtggaatg 419  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||||  |  ||||||  ||||| ||||| ||| |||||||||||| ||    
T  17143807 actgatatggaaacaccattgttaatcaaaagctttacttcagaaaatgattacttggcagtgaaaagtttgaaggatgttaaacatgttttgtggagtg 17143708  T
Q  420 agacattgaagatatggaagatagcaattccagtggctttgtgtttactttttcag 475  Q
    ||||| |||||||||||||||||||| |||||||||| ||||||| ||| ||||||    
T  17143707 agacagtgaagatatggaagatagcacttccagtggccttgtgttcactgtttcag 17143652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 324 - 544
Target Start/End: Complemental strand, 17155974 - 17155754
Alignment:
Q  324 atatggaaacaccattgttgattaaaagctttacttcagaaaatgattacttacctttgaaaaacttgaaagatgtgaaatatgttttgtggaatgagac 423  Q
    ||||||||||||||||| |||  ||||| |||||||||||||||||||||||  |  ||||||  ||||| ||||| ||| |||||||||||| ||||||    
T  17155974 atatggaaacaccattgctgaccaaaagatttacttcagaaaatgattacttggcagtgaaaagtttgaaggatgttaaacatgttttgtggagtgagac 17155875  T
Q  424 attgaagatatggaagatagcaattccagtggctttgtgtttactttttcagaacctaattggctcttcaaatttcatctatgctggtcatattggtgat 523  Q
    | |||||||||||||||||||| ||||||||||||||||||   | |||||  |||| |    | |||||| || |||||||||||||||| |||| |||    
T  17155874 agtgaagatatggaagatagcacttccagtggctttgtgttatttgtttcaatacctcacaaacacttcaacttccatctatgctggtcatcttggagat 17155775  T
Q  524 attcagctctcttcttactct 544  Q
    ||| | |||||||||| ||||    
T  17155774 attgaactctcttctttctct 17155754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 42 - 121
Target Start/End: Complemental strand, 40995901 - 40995822
Alignment:
Q  42 aatgtagtaagttttaccttaaaatttgtgttgttaagtcttcaaaaacataaaaagtattatttttattataaaacttc 121  Q
    |||||||||||| |||| || ||||||||||||| || |||||||||||||||||||| ||||||| ||| |||||||||    
T  40995901 aatgtagtaagtattacattgaaatttgtgttgtcaactcttcaaaaacataaaaagtgttattttcattttaaaacttc 40995822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 6108586 - 6108635
Alignment:
Q  68 tgtgttgttaagtcttcaaaaacataaaaagtattatttttattataaaa 117  Q
    ||||||||||| || ||||||||||||||||||||||||| ||| |||||    
T  6108586 tgtgttgttaactcctcaaaaacataaaaagtattattttcattttaaaa 6108635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 27756467 - 27756542
Alignment:
Q  42 aatgtagtaagttttaccttaaaatttgtgttgttaagtcttcaaaaacataaaaagtattatttttattataaaa 117  Q
    |||||||||||| |||| || ||||||||||||| || ||||||||| |||||||||| ||||||| ||| |||||    
T  27756467 aatgtagtaagtattacattgaaatttgtgttgtcaactcttcaaaagcataaaaagtgttattttcattttaaaa 27756542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 3427863 - 3427938
Alignment:
Q  42 aatgtagtaagttttaccttaaaatttgtgttgttaagtcttcaaaaacataaaaagtattatttttattataaaa 117  Q
    |||||||||||| ||   || ||| ||||||||| || |||||||||||||||||||| ||||||| ||| |||||    
T  3427863 aatgtagtaagtattgtattgaaacttgtgttgtcaactcttcaaaaacataaaaagtgttattttcattttaaaa 3427938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 1408616 - 1408694
Alignment:
Q  42 aatgtagtaagttttaccttaaaatttgtgttgttaagtcttcaaaaacataaaaagtattatttttattataaaactt 120  Q
    |||||||||| |||||| ||  || ||||||||| || |||||||||||||||||||| ||||||| ||| ||||||||    
T  1408616 aatgtagtaatttttacattggaacttgtgttgtcaactcttcaaaaacataaaaagttttattttcattttaaaactt 1408694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 117
Target Start/End: Complemental strand, 4941275 - 4941199
Alignment:
Q  41 taatgtagtaagttttaccttaaaatttgtgttgttaagtcttcaaaaacataaaaagtattatttttattataaaa 117  Q
    ||||||||||| | || | || ||| ||||||||| || || |||||| |||||||||| ||||||||||| |||||    
T  4941275 taatgtagtaattattgcattgaaacttgtgttgtcaactcctcaaaagcataaaaagtgttatttttattttaaaa 4941199  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 19187144 - 19187215
Alignment:
Q  49 taagttttaccttaaaatttgtgttgttaagtcttcaaaaacataaaaagtattatttttattataaaactt 120  Q
    |||||||||| || ||||||||||||| || ||||||||| |||||||||| || |||| ||| ||||||||    
T  19187144 taagttttacattgaaatttgtgttgtcaactcttcaaaagcataaaaagtgttgttttcattttaaaactt 19187215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 121
Target Start/End: Original strand, 21067613 - 21067692
Alignment:
Q  42 aatgtagtaagttttaccttaaaatttgtgttgttaagtcttcaaaaacataaaaagtattatttttattataaaacttc 121  Q
    |||||||||||| |||| || ||| ||||||||| |  ||||||||| ||||||||||| || ||| ||| |||||||||    
T  21067613 aatgtagtaagtattacattgaaacttgtgttgtcatctcttcaaaagcataaaaagtagtactttcattttaaaacttc 21067692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 38282507 - 38282574
Alignment:
Q  55 ttaccttaaaatttgtgttgttaagtcttcaaaaacataaaaagtattatttttattataaaacttca 122  Q
    |||| |||||||||||||||| || |||| ||||| ||||||||| ||||||| ||| ||||| ||||    
T  38282507 ttacattaaaatttgtgttgtcaactctttaaaaatataaaaagtgttattttcattttaaaatttca 38282574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 4614358 - 4614283
Alignment:
Q  42 aatgtagtaagttttaccttaaaatttgtgttgttaagtcttcaaaaacataaaaagtattatttttattataaaa 117  Q
    |||||||||||| |||| ||| ||||| |||||| || || |||||||||| ||||||  |||||||||| |||||    
T  4614358 aatgtagtaagtattacattagaatttatgttgtcaactcatcaaaaacatgaaaagtgctatttttattttaaaa 4614283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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