View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5730_low_11 (Length: 267)
Name: NF5730_low_11
Description: NF5730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5730_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 34454218 - 34454481
Alignment:
| Q |
1 |
taaactatcacttgtgtctatctctcataaattgagcaaagtaagtggaacaaagccaactcgtgtatatacaacttaaaagnnnnnnnn-cgatgtgat |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34454218 |
taaactatcacttgtgtctatctctcataaattgagcaaagtaagtggaacaaagccaactcgtgtatatacaacttaaaagaaaaaaaaacgatgtgat |
34454317 |
T |
|
| Q |
100 |
aaatgtaatacattgctaagcgatgtgttgacaaattttgattattgtttgcaccacacgtaatttagatgtagacatatttttagtgagggtaattgtt |
199 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34454318 |
aaatgtaatacattgctaagctatgtgttgacaaattttgattattgtttgcaccacacgtaatttagatgtagacatatttttagtgagggtaatagtt |
34454417 |
T |
|
| Q |
200 |
gcgatgataaattgacgaatattcgttgtagttttaagaacttaaccgagtagtattatctacc |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34454418 |
gcgatgataaattgacgaatattcgttgtagttttaagaacttaaccgagtaggattatctacc |
34454481 |
T |
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