View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5730_low_13 (Length: 252)
Name: NF5730_low_13
Description: NF5730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5730_low_13 |
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| [»] scaffold0137 (1 HSPs) |
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Alignment Details
Target: scaffold0137 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 16 - 233
Target Start/End: Original strand, 4039 - 4250
Alignment:
| Q |
16 |
atgcccaaaaacaccccaaccaaacctgaagaaagagcacctacaacactgaaaccaacaacaaaaagaccatccctgtcctcctagctaatgactaaaa |
115 |
Q |
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| T |
4039 |
atgcccaaaaacaccccaaccaaacctaaagaaagagcacctacaacactgaaaccaacaacaaaaagaccatccctgtcctcctagctaatgactaaaa |
4138 |
T |
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| Q |
116 |
tcaaaagcaagatggacctaatgagggtgattcttaattaacacttatatggaatgactaaaagtctaaaatgacatctccttcagaggaagaataca-- |
213 |
Q |
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| T |
4139 |
tcaaaagcaagatggacctaatgagggtgattcttaattaacacttatatggaatga--------ctaaaatgacatctccttcagaggaagaatacacc |
4230 |
T |
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| Q |
214 |
ccgtccgtcaacctatatgg |
233 |
Q |
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||||| |||||||||||||| |
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| T |
4231 |
ccgtctgtcaacctatatgg |
4250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 16 - 233
Target Start/End: Original strand, 3896374 - 3896596
Alignment:
| Q |
16 |
atgcccaaaaacaccccaaccaaacctgaagaaagagcacctacaacactgaaaccaacaacaaaaagaccatccctgtcctcctagctaatgactaaaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3896374 |
atgcccaaaaacaccccaaccaaacctgaagaaagagcacctacaacactgaaaccaacaacaaaaagaccatccctgtcctcctagctaatgactaaaa |
3896473 |
T |
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| Q |
116 |
tcaaaagcaagatggacctaatgagggtgattcttaattaacacttatatggaatgactaaaa-gtc--taaaatgacatctccttcagaggaagaatac |
212 |
Q |
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| T |
3896474 |
tcaaaagcaaaatggacctaatgagggtgattcttaaataatacttatatggaatgactaaaatgacattcatagcacatctccttcagaggaagaatac |
3896573 |
T |
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| Q |
213 |
a--ccgtccgtcaacctatatgg |
233 |
Q |
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| T |
3896574 |
accccgtccgtcaacctatatgg |
3896596 |
T |
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