View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5730_low_16 (Length: 241)
Name: NF5730_low_16
Description: NF5730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5730_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 33119147 - 33118915
Alignment:
| Q |
1 |
aaaccaatcatattttataaattttcgctattatcaaagatgaaataaagttaaattgttctcatatttgttttatcatacagagcttaatgagtggaaa |
100 |
Q |
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| T |
33119147 |
aaaccaatcatattgtataaattttcgctattatcaaagatgaaataaagttaaattgttctcatatttgttttatcatacagagcttaatgagtggaaa |
33119048 |
T |
|
| Q |
101 |
gcacttatgtacgtgtcataaaccatttttataaattagcacttatgtacgataagtttatataaactatggataagttattctataagcaccttaataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33119047 |
gcacttatgtacgtgtcataaaccatttttataaattagcacttatgtacgataagtttatataaactatggataagttattctataagcaccttaataa |
33118948 |
T |
|
| Q |
201 |
ggaaaacaaaatcttagaaaattgatgatgatg |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
33118947 |
ggaaaacaaaatcttagaaaattgatgatgatg |
33118915 |
T |
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