View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5730_low_18 (Length: 228)
Name: NF5730_low_18
Description: NF5730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5730_low_18 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 4128162 - 4127935
Alignment:
| Q |
1 |
agaaaaggcatgatacggccatttggtttgcaagccttagcatcaaaagaccagacagagaagactacaatatctttccggatatatagagtcgcggatc |
100 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4128162 |
agaaaatgcatgatagggccatttggtttgcaagccttagcatcaaaagaccagacagagaagactacaatatctttccggatatatagagtcgcggatc |
4128063 |
T |
|
| Q |
101 |
attataaatgtttgatgataagtgaccagaccaggttannnnnnnacactcttcaaacttattctgcggtgcatacatttcatttttcaatgacatcgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4128062 |
attataaatgtttgatgataagtgaccagaccaggttatttttttacactcttcaaacttattctgcagtgcatacatttcatttttcaatgacatcgaa |
4127963 |
T |
|
| Q |
201 |
tctctctttgaagtattcaaattttcta |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
4127962 |
tctctctttgaagtattcaaattttcta |
4127935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 193
Target Start/End: Complemental strand, 4141841 - 4141647
Alignment:
| Q |
3 |
aaaaggcatgatacggccatttggtttgcaagccttagcatcaaaagaccagacagagaagactacaatatctttccggatatatagagtcgcggatcat |
102 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||| ||| | |
|
|
| T |
4141841 |
aaaaggcatgatagggccatttggtttgcaagctttagcatcagaagaccagacagagagaactacaatatctttccgaatatatagagtcagcgatgaa |
4141742 |
T |
|
| Q |
103 |
tataaatgtttgatgataagtgaccagaccaggtta-nnnnnnnac---actcttcaaacttattctgcggtgcatacatttcatttttcaatga |
193 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| | || ||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
4141741 |
tataaatgcttgatgataagtgaccagaccaggtaattgtttttactgtactcttcaaacatattctgcaatgcatacatttcatttttcaatga |
4141647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 4136937 - 4136715
Alignment:
| Q |
1 |
agaaaaggcatgatacggccatttggtttgcaagccttagcatcaaaagaccagacagagaagactacaatatctttccggatatatagagtcgcggatc |
100 |
Q |
| |
|
||||| ||||||||| | ||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||| |||||||||| || ||| |
|
|
| T |
4136937 |
agaaatggcatgataggaccatttggtttgcaagctttagcatcaaaagaccaaacagagaggactacaatatctttccgaatatatagagccggcgatg |
4136838 |
T |
|
| Q |
101 |
attataaatgtttgatgataagtgaccagaccaggttannnnnnnacactcttcaaacttattctgcggtgcatacatttcatttttcaatgacatcgaa |
200 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||| ||||| ||| || ||||| | ||||||||| |||||| ||||||||||||| ||| |
|
|
| T |
4136837 |
gattcaaatgcttgatgataagtgaccagaccaggtta-tattttacactattcgaatttattttacggtgcatatatttca-ttttcaatgacattgaa |
4136740 |
T |
|
| Q |
201 |
tctctctttgaagtattcaaatttt |
225 |
Q |
| |
|
|||||| |||| | ||||||||||| |
|
|
| T |
4136739 |
tctctcattgagggattcaaatttt |
4136715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University