View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5730_low_4 (Length: 467)
Name: NF5730_low_4
Description: NF5730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5730_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 5e-94; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 5681376 - 5681583
Alignment:
| Q |
16 |
atgcaagaaggaagtacgtaagctattatatttatttatttgtatattttcgtgcaaggaaattgctgcaccaagcaaatatctttatatactaatgcct |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
5681376 |
atgcaagaaggaagtacgtaagctattatatttatttatttatatattttcgtgcaaggaaattgctgcaccaagcaaatatctttataca--aatgcct |
5681473 |
T |
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| Q |
116 |
tttgcaaatgaaagatatattaatgagttcaaaggccaccaacagatgttgatccatttgataatatgtcgattacactttgtaagaatgtaaattcaac |
215 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
5681474 |
tttgcaaatgaaagatatattaatgagttccaaggccaccaacagatgttgatccatttgataatacgttgattacactttgtaagaatgtaaattcaac |
5681573 |
T |
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| Q |
216 |
tctcgatata |
225 |
Q |
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||| |||||| |
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| T |
5681574 |
tcttgatata |
5681583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 5706428 - 5706635
Alignment:
| Q |
16 |
atgcaagaaggaagtacgtaagctattatatttatttatttgtatattttcgtgcaaggaaattgctgcaccaagcaaatatctttatatactaatgcct |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
5706428 |
atgcaagaaggaagtacgtaagctattatatttatttatttatatattttcgtgcaaggaaattgctgcaccaagcaaatatctttataca--aatgcct |
5706525 |
T |
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| Q |
116 |
tttgcaaatgaaagatatattaatgagttcaaaggccaccaacagatgttgatccatttgataatatgtcgattacactttgtaagaatgtaaattcaac |
215 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
5706526 |
tttgcaaatgaaagatatattaatgagttccaaggccaccaacagatgttgatccatttgataatacgttgattacactttgtaagaatgtaaattcaac |
5706625 |
T |
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| Q |
216 |
tctcgatata |
225 |
Q |
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||| |||||| |
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| T |
5706626 |
tcttgatata |
5706635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 271 - 450
Target Start/End: Original strand, 5681674 - 5681853
Alignment:
| Q |
271 |
atatataacataaaacaagaagnnnnnnncataagctttgctagtgaaaaaataggttatccaatttcaaagatttgtgacttggatcttcttcttccta |
370 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5681674 |
atatctaacataaaacaagaagtttttttcataagctttgctagtgaaaaaataggttatccaatttcaaagatttgtgtcttggatcttcttcttccta |
5681773 |
T |
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| Q |
371 |
ccaatgtacaaattcgtttgttcatattattatgatgcttggctatttttggttgacgcaacaaaagaaattattgaatg |
450 |
Q |
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| T |
5681774 |
ccaatgtacaaattcgtttgttcatattattatgatgcttggctatttttggttgacgcaacaaaagaaattattgaatg |
5681853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 271 - 450
Target Start/End: Original strand, 5706726 - 5706905
Alignment:
| Q |
271 |
atatataacataaaacaagaagnnnnnnncataagctttgctagtgaaaaaataggttatccaatttcaaagatttgtgacttggatcttcttcttccta |
370 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5706726 |
atatctaacataaaacaagaagtttttttcataagctttgctagtgaaaaaataggttatccaatttcaaagatttgtgtcttggatcttcttcttccta |
5706825 |
T |
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| Q |
371 |
ccaatgtacaaattcgtttgttcatattattatgatgcttggctatttttggttgacgcaacaaaagaaattattgaatg |
450 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5706826 |
ccaatgtacaaattcgtttgttcatattattatgatgcttggctatttttggttgacgcaacaaaagaaattattgaatg |
5706905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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