View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5730_low_5 (Length: 445)
Name: NF5730_low_5
Description: NF5730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5730_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 8 - 430
Target Start/End: Complemental strand, 1959995 - 1959573
Alignment:
| Q |
8 |
gagcacagagtggtagcaaatcatgtcggtccaagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctataa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1959995 |
gagcacagagtggtagcaaatcatgtcggtccaagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctataa |
1959896 |
T |
|
| Q |
108 |
aggaattagtatcagaagataatcctccaaagtatagggaaacaacagtgcatgattatgtttctttctccatggcaagaggccttgatggaacttctct |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1959895 |
aggaattagtatcagaagataatcctccaaagtatagggaaacaacagtgcatgattatgtttctttctccatggcaagaggccttgatggaacttctct |
1959796 |
T |
|
| Q |
208 |
tttgccatatttcaagattggaaatttctgatacacacaacaaaggtggtttaacatgtatacaatataattaaaataactttgtagcattccatcaagt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1959795 |
tttgccatatttcaagattggaaatttctgatacacacaacaaaggtggtttaacatgtatacaatataattcaaataactttgtagcattccatcaagt |
1959696 |
T |
|
| Q |
308 |
aagaggacagcagtgattaagattatagggatacaaacctattttcttgtggactacgagaaccttgtgaacctcatgttttgcctgattataggtaaga |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1959695 |
aagaggacagcagtgattaagattatagggatacaaacctattttcttgtggactacgagaaccttgtgaacctcatgttttgcctgattataggtaaga |
1959596 |
T |
|
| Q |
408 |
ccgattcccaattcgaccgatct |
430 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
1959595 |
ccgattcccaattcgaccaatct |
1959573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 8 - 290
Target Start/End: Original strand, 2023330 - 2023612
Alignment:
| Q |
8 |
gagcacagagtggtagcaaatcatgtcggtccaagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctataa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2023330 |
gagcacagagtggtagcaaatcatgtcggtccaagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctataa |
2023429 |
T |
|
| Q |
108 |
aggaattagtatcagaagataatcctccaaagtatagggaaacaacagtgcatgattatgtttctttctccatggcaagaggccttgatggaacttctct |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2023430 |
aggaattagtatcagaagataatcctccaaagtatagggaaacaacagtgcatgattatgtttctttctccatggcaagaggccttgatggaacttctcc |
2023529 |
T |
|
| Q |
208 |
tttgccatatttcaagattggaaatttctgatacacacaacaaaggtggtttaacatgtatacaatataattaaaataacttt |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2023530 |
tttgccatatttcaagattggaaatttctgatacacacaataaaggtggtttaacatgtatgcaatataattaaaataacttt |
2023612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 296 - 386
Target Start/End: Original strand, 2023807 - 2023897
Alignment:
| Q |
296 |
attccatcaagtaagaggacagcagtgattaagattatagggatacaaacctattttcttgtggactacgagaaccttgtgaacctcatgt |
386 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||| |
|
|
| T |
2023807 |
attccatcaagtcagaggacagcaacaattaagattatagggatacaaacctattttcttgaggactacaagaaccttgtgaacatcatgt |
2023897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University