View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5730_low_7 (Length: 377)
Name: NF5730_low_7
Description: NF5730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5730_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 9880234 - 9880103
Alignment:
| Q |
1 |
gtagagaaaccaatatcttcattttctgcttaaccatgtcatggtcttcatcttcagtcttaaggagatcaatgaatgtcttactttctggaactaattt |
100 |
Q |
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| T |
9880234 |
gtagagaaaccaatatctgcattttctgcttaaccatgtcatggtcttcatcttcagtcttaaggagatctatgaatgtcttactttctggaactaattt |
9880135 |
T |
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| Q |
101 |
tagggctacctgcaatgccaattatatttgtt |
132 |
Q |
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| T |
9880134 |
tagggctacctgcaatgccaattatatttgtt |
9880103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 273 - 359
Target Start/End: Complemental strand, 9879821 - 9879735
Alignment:
| Q |
273 |
atatacgttatttagcatgcaaaatcaatctacaacgtaaaactgattgaaaattgaaagcaagaaaataaagaaaacgtgattagt |
359 |
Q |
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| T |
9879821 |
atatacgttatttagcatgcaaaatcaatctacaacataaaactgattgaaaattgaaagcaagaaaataaagaaaacgtgattagt |
9879735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 129
Target Start/End: Complemental strand, 9873130 - 9873001
Alignment:
| Q |
3 |
agagaaaccaatatcttcattttctgcttaaccatgtca---tggtcttcatcttcagtcttaaggagatcaatgaatgtcttactttctggaactaatt |
99 |
Q |
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| T |
9873130 |
agagaaaccaatatttgcattttctgcttcagcatgtgactattatcttcatcttcagtcttaaggagatcaatgaatgtcttactttctggaactaatc |
9873031 |
T |
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| Q |
100 |
ttagggctacctgcaatgccaattatattt |
129 |
Q |
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| T |
9873030 |
ttagagccacctgaaacgtcatttatattt |
9873001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 283
Target Start/End: Complemental strand, 9879875 - 9879836
Alignment:
| Q |
244 |
gacataatcaagaatatgtgattatcaagatatacgttat |
283 |
Q |
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| T |
9879875 |
gacataatcaagaatatgtgattatcaagatatacgttat |
9879836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 166
Target Start/End: Complemental strand, 9880059 - 9880020
Alignment:
| Q |
127 |
tttgtttgaagtaatgatcataatcctaatcccctcaccc |
166 |
Q |
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| T |
9880059 |
tttgtttgaagtaatgatcataatcctaatcccctcaccc |
9880020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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