View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5730_low_8 (Length: 366)
Name: NF5730_low_8
Description: NF5730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5730_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 38447478 - 38447834
Alignment:
| Q |
1 |
agagaattgggaaagcttggatactattcgcatgcactttgagacaaatttggttgatgagaaagggaagaagcaaatttcttcggagagcgatgttgaa |
100 |
Q |
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| T |
38447478 |
agagaattgggaaagcttggatactattcgcatgcactttgagacaaatttggttgatgagaaagggaagaagcaaatttcttcggagagcgatgttgaa |
38447577 |
T |
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| Q |
101 |
gtaaaccatgaagacataatgaatacggaactttgggatgacatgttcagcacattagtcaatgacgatgacaataacttgcatgacaagcttccatgcg |
200 |
Q |
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||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
38447578 |
gtaaaccatgacgacataatgaatccggaactttgggatgacatgttcagcacattagtgaatgacgatgacaataacttgcatgacaagcttccatacg |
38447677 |
T |
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| Q |
201 |
atgttaatgatgccttagatacttgcatgaaaatgcaatcagatctgcctccactcccaccacctatggagactcaacatcagatgtcagagataaataa |
300 |
Q |
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|||||| |||||||||||| ||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38447678 |
atgttagtgatgccttagacacttgcatggcaatgcagtcagatctgcctccactcccactacctatggagactcaacatcagatgtcagagataaataa |
38447777 |
T |
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| Q |
301 |
ctggaagaaggcaattgctttggaggaaggtgttgatgaaaaccagatcatattctt |
357 |
Q |
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| T |
38447778 |
ctggaagaaggcaattgctttggaggaaggtgttgatgaaaaccagatcattttctt |
38447834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 38343285 - 38343472
Alignment:
| Q |
1 |
agagaattgggaaagcttggatactattcgcatgcactttgagacaaatttggttgatgagaaagggaagaagcaaatttcttcggagagcgatgttgaa |
100 |
Q |
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| T |
38343285 |
agagaattgggaaagcttggatactattcgcatgcactttgagacaaatttggttgatgagaaagggaagaagcaaatttcttcggagagcgatgttgaa |
38343384 |
T |
|
| Q |
101 |
gtaaaccatgaagacataatgaatacggaactttgggatgacatgttcagcacattagtcaatgacgatgacaataacttgcatgaca |
188 |
Q |
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| T |
38343385 |
gtaaaccatgacgacataatgaatccggaactttgggatgacatgttcagcacattagtgaatgacgatgacaataacttgcatgaca |
38343472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 239 - 357
Target Start/End: Complemental strand, 38550553 - 38550435
Alignment:
| Q |
239 |
tcagatctgcctccactcccaccacctatggagactcaacatcagatgtcagagataaataactggaagaaggcaattgctttggaggaaggtgttgatg |
338 |
Q |
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| T |
38550553 |
tcagatctgcctccactcccactacctatggagactcaacatcagatgtcagagataaataactggaagaaggcaattgctttggaggaaggtgttgatg |
38550454 |
T |
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| Q |
339 |
aaaaccagatcatattctt |
357 |
Q |
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||||||||||||| ||||| |
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| T |
38550453 |
aaaaccagatcattttctt |
38550435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 26032785 - 26032718
Alignment:
| Q |
40 |
tgagacaaatttggttgatgagaaagggaagaagcaaatttcttcggagagcgatgttgaagtaaacc |
107 |
Q |
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|||||||||||| |||||||| ||||||||||||| ||||| | |||| ||||||||||| ||||| |
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| T |
26032785 |
tgagacaaatttcgttgatgaaaaagggaagaagcctatttcgttggaggacgatgttgaagcaaacc |
26032718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 38448004 - 38448067
Alignment:
| Q |
46 |
aaatttggttgatgagaaagggaagaagcaaatttcttcggagagcgatgttgaagtaaaccat |
109 |
Q |
| |
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|||||| |||||||| |||||||||||| | |||||||||||| |||| |||||| ||||||| |
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| T |
38448004 |
aaattttgttgatgaagaagggaagaagccagtttcttcggagaacgattttgaaggaaaccat |
38448067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 38447900 - 38447933
Alignment:
| Q |
257 |
ccaccacctatggagactcaacatcagatgtcag |
290 |
Q |
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| T |
38447900 |
ccaccacctatggagactcaatatcagatgtcag |
38447933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 53351155 - 53351121
Alignment:
| Q |
257 |
ccaccacctatggagactcaacatcagatgtcaga |
291 |
Q |
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| T |
53351155 |
ccaccacctatggagactcaatatcagatgtcaga |
53351121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 53351021 - 53350960
Alignment:
| Q |
46 |
aaatttggttgatgagaaagggaagaagcaaatttcttcggagagcgatgttgaagtaaacc |
107 |
Q |
| |
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||||||||||||||| ||||| ||||||| |||||||| | || ||||||||||| ||||| |
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| T |
53351021 |
aaatttggttgatgaaaaaggaaagaagccaatttctttgaaggacgatgttgaagcaaacc |
53350960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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