View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5730_low_9 (Length: 322)
Name: NF5730_low_9
Description: NF5730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5730_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 8843874 - 8844152
Alignment:
| Q |
18 |
tcaagttccaactcctaaatcttaaccgaaagtcagaagtatatactttctatgtggtatcctcatcttgcattaaatcatttaaatgtataggaaaatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8843874 |
tcaagttccaactcctaaatcttaaccgaaagtcagaagtatatactttctatgtggtatcctcatcttgcattaaatcatttaaatgtataggaaaatg |
8843973 |
T |
|
| Q |
118 |
ttaataggtgtctttcacgcacacgaaacacatgttaataaactatgtataagatctctnnnnnnngagctatgtataagaattttgtttaaaagtcgta |
217 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8843974 |
ttaatagatgtctttcacacacacgaaacacatgttaataaactatgtataagatctctaaaaaaagagctatgtataagaattttgtttaaaagtcgta |
8844073 |
T |
|
| Q |
218 |
tattaaattcttaaagatacactaattatttttcagtgtaaaatttctacttttaagttctttaacacgtgttttgggg |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| ||| ||| |||||||||||| ||||||||||| |
|
|
| T |
8844074 |
tattaaattcttaaagatacactaattattttttagtgtaaaatttttacctttgagttctttaacatgtgttttgggg |
8844152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University