View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5731-Insertion-2 (Length: 521)
Name: NF5731-Insertion-2
Description: NF5731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5731-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 8 - 484
Target Start/End: Complemental strand, 32808267 - 32807789
Alignment:
| Q |
8 |
actagagcatcttctaaagctttctttaacttctcggtcactatttgaggaggaaaatctttgtttgcttcgaagaaatgaaccgttttcacatgaaaat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32808267 |
actagagcatcttctaaagctttctttaacttctcggtcactatttgaggaggaaaatctttgtttgcttcgaagaaatgaaccgttttcacatgaaaat |
32808168 |
T |
|
| Q |
108 |
tgagaactctgtctatgtttgataagaacaaggatttcttttcgatttgttttgatgggaaaatcattgaagttttgtggattgtcaccttcatgtcttg |
207 |
Q |
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| T |
32808167 |
tgagaactctgtctatgtttgataagaacaaggatttcttttcgatttgttttgatgggaaaatcattgaagttttgtggattgtcaccttcatgtcttg |
32808068 |
T |
|
| Q |
208 |
aagaagaggtgtagtttcttggctagtggtttccatcccttgtcgg-nnnnnnnnnttagtaagttag-tatgtgtgtgtttggtttggtgtggccttga |
305 |
Q |
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| T |
32808067 |
aagaagaggtgtcctttcttggctagtggtttccatcccttgttggaaaaaaaaaattagcaagttagctatgtgtgtgtttggtttggtgtggccttca |
32807968 |
T |
|
| Q |
306 |
catttatacatagggaattctagcctatccatgtgacgttgttgcgtgccaattacgggtattcaaaatcaaaccaatcaatagaaaagggcaatccgaa |
405 |
Q |
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| T |
32807967 |
catttatacatagggaattctagcctatccatatgacgttgttgcgtgccaattatgggtattcaaaatcaaaccaatcaataaaaaagggcaatccgaa |
32807868 |
T |
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| Q |
406 |
tcaacacaattcgaagcccataaaaaaccaagtttaatttggatgtgttcgtgtcaatttttcacccaactatgtggtt |
484 |
Q |
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| T |
32807867 |
tcaacacaattcgaagcccataaaaaaccaagtttagtttggatgtgttcgtgtcaatttttcacccaactatgcggtt |
32807789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 8 - 246
Target Start/End: Complemental strand, 32824962 - 32824727
Alignment:
| Q |
8 |
actagagcatcttctaaagctttctttaacttctcggtcactatttgaggaggaaaatctttgtttgcttcgaagaaatgaaccgttttcacatgaaaat |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||| |
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| T |
32824962 |
actagagcatcttctaaagctttctttaacttctcggtcactatttgaggaggaaaatctttgtttgcttcgaagaaatgaaccgtttttacgtagaaat |
32824863 |
T |
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| Q |
108 |
tgagaactctgtctatgtttgataagaacaaggatttcttttcgatttgttttgatgggaaaatcattgaagttttgtggattgtcaccttcatgtcttg |
207 |
Q |
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|||| || ||||||| ||||||||||||| |||||| || ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32824862 |
tgagtaccttgtctatatttgataagaacatggatttgttctcggtttgttttgatggaaaaatcattgaagttttgtggattgtcaccttcatgtc--- |
32824766 |
T |
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| Q |
208 |
aagaagaggtgtagtttcttggctagtggtttccatccc |
246 |
Q |
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| T |
32824765 |
aagaagaggtttagtttctttgtttgtggttcccatccc |
32824727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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