View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5731-Insertion-3 (Length: 496)
Name: NF5731-Insertion-3
Description: NF5731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5731-Insertion-3 |
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| [»] scaffold0234 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 161 - 495
Target Start/End: Complemental strand, 2598856 - 2598533
Alignment:
| Q |
161 |
tcaccactagaaaatatacatttgacatcagggttttcacatcggtgaagaaatacttgaggggaaaagagatgcggtggcaatattgaaattttagtga |
260 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||| | ||||||||||| |||||||||||| || |
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| T |
2598856 |
tcactactagaaaatatacatttgacatcagggttttcaca----------aatacctgaagggaaaagacacgcggtggcaattttgaaattttagcga |
2598767 |
T |
|
| Q |
261 |
actttgaagaagtttttcacatcatgctgaggaaatgactgaggggaaaaataaatgctaaagagttttcacatcagtggaactaatgcttgagggaaaa |
360 |
Q |
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||||||| |||||| ||| ||||| | ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
2598766 |
actttgatgaagttgttcccatca-gttgaggaaatgactgaagggaaaaataaatgctaaagagttttgacatcagtggaactaatgcatgagggaaaa |
2598668 |
T |
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| Q |
361 |
tataaacggggaggcaatttgctaatattagtgaaattttcacataggtgctg--gatagataggggaaaacacactcagatatacgaattttgtcaatt |
458 |
Q |
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|||| ||| | | |||||| ||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||| ||| || ||| || |
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| T |
2598667 |
tatatgcggtg--gtaatttggtaatattagtgaaattttcacataggtgctggtgatagatacgagaaaacacactcagatttacaaaacttgaatgtt |
2598570 |
T |
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| Q |
459 |
cttctctcaagcttctagttttcacgctttttaacaa |
495 |
Q |
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||| ||| |||||||||||||||||| |||||||||| |
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| T |
2598569 |
cttttctaaagcttctagttttcacgttttttaacaa |
2598533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 259 - 393
Target Start/End: Original strand, 12699758 - 12699892
Alignment:
| Q |
259 |
gaactttgaagaagtttttcacatcatgctgaggaaatgactgaggggaaaaataaatgctaaagagttttcacatcagtggaact-aatgcttgaggga |
357 |
Q |
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|||||||| ||||| |||||||| || |||||||||||| || || |||| |||| || ||||| |||||||||||| |||||||| |||| ||||||| |
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| T |
12699758 |
gaactttggagaaggttttcacacca-gctgaggaaatgcctaagaggaataatagatactaaatagttttcacatctgtggaactaaatgactgaggga |
12699856 |
T |
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| Q |
358 |
aaatataaacggggaggcaatttgctaatattagtg |
393 |
Q |
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| T |
12699857 |
aaagataaacgcggtgacaatttcgtaatattagtg |
12699892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 12699696 - 12699757
Alignment:
| Q |
166 |
actagaaaatatacatttgacatcagggttttcacatcggtgaagaaatacttgaggggaaa |
227 |
Q |
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|||||||||| ||||||||||||||||| ||||||||| ||| |||||||||||| |||||| |
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| T |
12699696 |
actagaaaatttacatttgacatcagggctttcacatcagtggagaaatacttgaagggaaa |
12699757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 51741421 - 51741478
Alignment:
| Q |
166 |
actagaaaatatacatttgacatcagggttttcacatcggtgaagaaatacttgaggg |
223 |
Q |
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| T |
51741421 |
actagaaaaaagacatttgacatcagggttttcacatcagtgcaaaaatacatgaggg |
51741478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 166 - 266
Target Start/End: Original strand, 24167163 - 24167264
Alignment:
| Q |
166 |
actagaaaatatacatttgacatcagggttttcacatcggtgaagaaatacttgaggggaaa-agagatgcggtggcaatattgaaattttagtgaactt |
264 |
Q |
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|||||||||||||||||| ||| |||| ||||||||| ||| |||||||| |||||||||| | | | |||||||||| ||||||||||||||||||| |
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| T |
24167163 |
actagaaaatatacatttaacaatagggatttcacatcagtggagaaatacatgaggggaaatatacacacggtggcaattttgaaattttagtgaactt |
24167262 |
T |
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| Q |
265 |
tg |
266 |
Q |
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|| |
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| T |
24167263 |
tg |
24167264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 27499710 - 27499674
Alignment:
| Q |
157 |
tctttcaccactagaaaatatacatttgacatcaggg |
193 |
Q |
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|||||||| | |||||||||||||||||||||||||| |
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| T |
27499710 |
tctttcactagtagaaaatatacatttgacatcaggg |
27499674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0234 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0234
Description:
Target: scaffold0234; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 392
Target Start/End: Original strand, 5099 - 5199
Alignment:
| Q |
292 |
gaaatgactgaggggaaaaataaatgctaaagagttttcacatcagtggaactaatgcttgagggaaaatataaacggggaggcaatttgctaatattag |
391 |
Q |
| |
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|||||| |||||||||||| || | || ||||||||| ||||||||||||||||||| |||||| ||| ||||||| || |||||||| ||||||||| |
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| T |
5099 |
gaaatggctgaggggaaaagtagaagcccaagagttttgacatcagtggaactaatgcatgaggggaaacataaacgcggtggcaattttgtaatattag |
5198 |
T |
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| Q |
392 |
t |
392 |
Q |
| |
|
| |
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| T |
5199 |
t |
5199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 292 - 392
Target Start/End: Complemental strand, 9809527 - 9809427
Alignment:
| Q |
292 |
gaaatgactgaggggaaaaataaatgctaaagagttttcacatcagtggaactaatgcttgagggaaaatataaacggggaggcaatttgctaatattag |
391 |
Q |
| |
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|||||| ||||||||||||||| | || | ||||||| |||| |||||||||||||| |||||| ||| ||||||| || |||||||| ||||||||| |
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| T |
9809527 |
gaaatggctgaggggaaaaatagaagcccaggagttttgacataagtggaactaatgcatgaggggaaacataaacgcggtggcaatttcgtaatattag |
9809428 |
T |
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| Q |
392 |
t |
392 |
Q |
| |
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| |
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| T |
9809427 |
t |
9809427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 203
Target Start/End: Original strand, 31713443 - 31713486
Alignment:
| Q |
160 |
ttcaccactagaaaatatacatttgacatcagggttttcacatc |
203 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31713443 |
ttcactactagaaaatatacatttgacatcagggttttcacatc |
31713486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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